View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9486_low_20 (Length: 389)

Name: NF9486_low_20
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9486_low_20
NF9486_low_20
[»] chr5 (8 HSPs)
chr5 (119-328)||(22775359-22775568)
chr5 (113-171)||(22778126-22778184)
chr5 (108-164)||(42994471-42994527)
chr5 (111-164)||(33766482-33766535)
chr5 (118-162)||(20339799-20339843)
chr5 (112-164)||(23237039-23237091)
chr5 (118-162)||(25838446-25838490)
chr5 (113-197)||(41608409-41608493)
[»] chr1 (11 HSPs)
chr1 (13-111)||(40858914-40859011)
chr1 (111-162)||(17238479-17238530)
chr1 (118-162)||(19990280-19990324)
chr1 (107-162)||(6631309-6631364)
chr1 (111-162)||(6632088-6632139)
chr1 (112-161)||(17237703-17237752)
chr1 (118-147)||(47967729-47967758)
chr1 (118-162)||(8473199-8473243)
chr1 (114-162)||(16073323-16073371)
chr1 (118-162)||(35576001-35576045)
chr1 (118-162)||(47966999-47967043)
[»] chr3 (10 HSPs)
chr3 (111-197)||(37065964-37066050)
chr3 (118-177)||(23310504-23310563)
chr3 (118-177)||(32982272-32982331)
chr3 (120-162)||(16913926-16913968)
chr3 (112-158)||(33639658-33639704)
chr3 (112-162)||(52362638-52362688)
chr3 (118-162)||(17343764-17343808)
chr3 (118-162)||(19192317-19192361)
chr3 (118-162)||(43493640-43493684)
chr3 (118-162)||(54515673-54515717)
[»] chr6 (7 HSPs)
chr6 (109-164)||(25345604-25345659)
chr6 (118-162)||(3645541-3645585)
chr6 (118-162)||(3646683-3646727)
chr6 (118-162)||(13703304-13703348)
chr6 (118-162)||(16008233-16008277)
chr6 (118-162)||(25133285-25133329)
chr6 (118-162)||(25136589-25136633)
[»] chr2 (9 HSPs)
chr2 (112-162)||(41320007-41320057)
chr2 (117-162)||(13545370-13545415)
chr2 (111-192)||(32361968-32362050)
chr2 (111-175)||(529603-529667)
chr2 (118-162)||(2283941-2283985)
chr2 (118-162)||(2285063-2285107)
chr2 (118-162)||(20634206-20634250)
chr2 (118-162)||(34239584-34239628)
chr2 (118-162)||(44532015-44532059)
[»] chr8 (5 HSPs)
chr8 (116-162)||(14396672-14396718)
chr8 (118-162)||(3206472-3206516)
chr8 (110-162)||(5562778-5562830)
chr8 (118-162)||(14395136-14395180)
chr8 (118-162)||(18195237-18195281)
[»] chr4 (6 HSPs)
chr4 (117-162)||(6946545-6946590)
chr4 (111-140)||(31919715-31919744)
chr4 (118-162)||(1953519-1953563)
chr4 (118-162)||(5045895-5045939)
chr4 (118-162)||(13265512-13265556)
chr4 (118-162)||(26043724-26043768)
[»] scaffold0169 (1 HSPs)
scaffold0169 (118-162)||(478-522)
[»] chr7 (3 HSPs)
chr7 (118-162)||(11511046-11511090)
chr7 (118-162)||(19386818-19386862)
chr7 (118-162)||(39832250-39832294)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 119 - 328
Target Start/End: Original strand, 22775359 - 22775568
Alignment:
Q  119 gatatattgactccaagagtaagtgtatagtcttactccaaatccttgccatcaattctttttaatctaatggttttaagtattgctttatttgctcatt 218  Q
    ||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||    
T  22775359 gatatattgactctaatagcaagtgtatagtcttactccaaatccttgccatcaattctttttaatctaatggtttaaagcattgctttattcgctcatt 22775458  T
Q  219 ccgtgaacattccgtaggctttcttcctcctaaaaacaatttttatatttttaattcccaaaatattgatcgaaagtccgtttccaaactgcatttcatg 318  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||   ||||||||||||||||||||||  ||||| |||||||||||||||||||||||    
T  22775459 ccgtcaacatcccgtaggctttcttcctcctaaaaacatttttttattttttaattcccaaaatattgaaggaaagcccgtttccaaactgcatttcatg 22775558  T
Q  319 attagaaatc 328  Q
    ||||| ||||    
T  22775559 attagtaatc 22775568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 22778184 - 22778126
Alignment:
Q  113 aggaaggatatattgactccaagagtaagtgtatagtcttactccaaatccttgccatc 171  Q
    |||| ||||||||||||| |||||||||||  |||| ||||||||||||| ||||||||    
T  22778184 aggagggatatattgacttcaagagtaagtcaatagacttactccaaatcattgccatc 22778126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 164
Target Start/End: Original strand, 42994471 - 42994527
Alignment:
Q  108 taaagaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatcct 164  Q
    ||||||||| ||||||||||||||||||||||||| || ||  |||||||| |||||    
T  42994471 taaagaggagggatatattgactccaagagtaagtctaaagagttactccacatcct 42994527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 33766482 - 33766535
Alignment:
Q  111 agaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatcct 164  Q
    |||||| ||||||||||||||||||||||||| || ||  |||||||| |||||    
T  33766482 agaggagggatatattgactccaagagtaagtctaaagagttactccacatcct 33766535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 20339843 - 20339799
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  20339843 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 20339799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 23237039 - 23237091
Alignment:
Q  112 gaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatcct 164  Q
    ||||| ||||||||||||||||||||||||| || ||  |||||||| |||||    
T  23237039 gaggagggatatattgactccaagagtaagtctaaagagttactccacatcct 23237091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 25838446 - 25838490
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  25838446 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 25838490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 197
Target Start/End: Original strand, 41608409 - 41608493
Alignment:
Q  113 aggaaggatatattgactccaagagtaagtgtatagtcttactccaaatccttgccatcaattctttttaatctaatggttttaa 197  Q
    |||| |||||| ||||||| || ||||||| | ||  |||||| ||||||  |||| | ||||||||||||||||| ||||||||    
T  41608409 aggagggatattttgactctaaaagtaagtctctaaacttacttcaaatctctgcccttaattctttttaatctaacggttttaa 41608493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 40858914 - 40859011
Alignment:
Q  13 atactctttttaaaccctatttatttaaatagacaaagacctggactttctaaaaagtgtattaggtctattataccgacttttatatatgtaattaaa 111  Q
    |||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||    
T  40858914 atactctttttaaacc-tatttatttaaatagacaaagatttggactttctaaaaagtgtattaggtctattaatccgacttttatatatgtagttaaa 40859011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 17238530 - 17238479
Alignment:
Q  111 agaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||| |||||||||||||||||| ||||| |||||||||||||    
T  17238530 agaggagggatattttgactccaagagtaagtttatagacttactccaaatc 17238479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 19990280 - 19990324
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    ||||||||||||||||||||||||| || || |||||||||||||    
T  19990280 ggatatattgactccaagagtaagtctaaagacttactccaaatc 19990324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 6631309 - 6631364
Alignment:
Q  107 ttaaagaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||| ||||| |||||| ||||||||||| |||||| ||||| |||||||||||||    
T  6631309 ttaatgaggagggatattttgactccaagggtaagtttatagacttactccaaatc 6631364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 6632139 - 6632088
Alignment:
Q  111 agaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||| | |||||||||||||||| ||||| |||||||||||||    
T  6632139 agaggagggatatttagactccaagagtaagtttatagacttactccaaatc 6632088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 17237703 - 17237752
Alignment:
Q  112 gaggaaggatatattgactccaagagtaagtgtatagtcttactccaaat 161  Q
    ||||| |||||| |||||| ||||||||||| ||||| ||||||||||||    
T  17237703 gaggagggatattttgactgcaagagtaagtttatagacttactccaaat 17237752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 47967758 - 47967729
Alignment:
Q  118 ggatatattgactccaagagtaagtgtata 147  Q
    ||||||||||||||||||||||||||||||    
T  47967758 ggatatattgactccaagagtaagtgtata 47967729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 8473199 - 8473243
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  8473199 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 8473243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 16073371 - 16073323
Alignment:
Q  114 ggaaggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||| |||||||||||||||||||||||| || || |||| ||||||||    
T  16073371 ggaaagatatattgactccaagagtaagtctaaagacttattccaaatc 16073323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 35576045 - 35576001
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  35576045 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 35576001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 47966999 - 47967043
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    ||||||||||||||||||||||||||| ||   ||||||||||||    
T  47966999 ggatatattgactccaagagtaagtgtttaaagttactccaaatc 47967043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 37065964 - 37066050
Alignment:
Q  111 agaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatccttgccatcaattctttttaatctaatggttttaa 197  Q
    |||||| |||||| |||||||||||||||||| | ||  ||||||||||||| ||||| | ||||||||||||||||| ||||||||    
T  37065964 agaggagggatattttgactccaagagtaagtctctaaacttactccaaatctttgcccttaattctttttaatctaacggttttaa 37066050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 23310504 - 23310563
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatccttgccatcaattct 177  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||| | ||||| ||||||    
T  23310504 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattct 23310563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 32982272 - 32982331
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatccttgccatcaattct 177  Q
    |||||| |||||||||||||||||| ||||| ||||||||||||| | ||||| ||||||    
T  32982272 ggatattttgactccaagagtaagtctatagacttactccaaatcttggccattaattct 32982331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 162
Target Start/End: Complemental strand, 16913968 - 16913926
Alignment:
Q  120 atatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    ||||||||||||||||||||||||||   ||||||||||||||    
T  16913968 atatattgactccaagagtaagtgtaatatcttactccaaatc 16913926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 33639704 - 33639658
Alignment:
Q  112 gaggaaggatatattgactccaagagtaagtgtatagtcttactcca 158  Q
    ||||| ||||||||||||||||||||||||| || || |||||||||    
T  33639704 gaggagggatatattgactccaagagtaagtctaaagacttactcca 33639658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 52362638 - 52362688
Alignment:
Q  112 gaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    ||||| |||||| |||||||||||||||||| ||||| | |||||||||||    
T  52362638 gaggagggatattttgactccaagagtaagtttatagacctactccaaatc 52362688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 17343808 - 17343764
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  17343808 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 17343764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 19192361 - 19192317
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  19192361 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 19192317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 43493684 - 43493640
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  43493684 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 43493640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 54515717 - 54515673
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  54515717 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 54515673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 164
Target Start/End: Complemental strand, 25345659 - 25345604
Alignment:
Q  109 aaagaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatcct 164  Q
    |||||||| |||||||||||||||||||||||||||| ||  |||||||| |||||    
T  25345659 aaagaggagggatatattgactccaagagtaagtgtaaagagttactccacatcct 25345604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 3645541 - 3645585
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  3645541 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 3645585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 3646727 - 3646683
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  3646727 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 3646683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 13703348 - 13703304
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  13703348 ggatattttgactccaagagtaagtgtaacatcttactccaaatc 13703304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 16008233 - 16008277
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  16008233 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 16008277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 25133285 - 25133329
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  25133285 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 25133329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 25136633 - 25136589
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  25136633 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 25136589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 41320007 - 41320057
Alignment:
Q  112 gaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    ||||| |||||| |||||||||||||||||| ||||| |||||||||||||    
T  41320007 gaggagggatattttgactccaagagtaagtttatagacttactccaaatc 41320057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 13545415 - 13545370
Alignment:
Q  117 aggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    ||||||| |||||||||||||||||| ||||| |||||||||||||    
T  13545415 aggatattttgactccaagagtaagtttatagacttactccaaatc 13545370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 32362050 - 32361968
Alignment:
Q  111 agaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatccttgccatcaattct-ttttaatctaatggt 192  Q
    |||||| |||||||| |||||||||||||||| ||||| |||  ||||||||  | ||||| ||| | |||||||||||||||    
T  32362050 agaggatggatatatcgactccaagagtaagtctatagactttttccaaatcactaccatctattttgttttaatctaatggt 32361968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 529667 - 529603
Alignment:
Q  111 agaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatccttgccatcaatt 175  Q
    |||||| ||||  ||||||||||||||||||| || || ||||||||||||| | ||||| ||||    
T  529667 agaggagggatccattgactccaagagtaagtataaagacttactccaaatcttagccattaatt 529603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 2283941 - 2283985
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  2283941 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 2283985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 2285107 - 2285063
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  2285107 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 2285063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 20634250 - 20634206
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  20634250 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 20634206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 34239628 - 34239584
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||| |||||  ||||||||||||    
T  34239628 ggatattttgactccaagagtaagtctatagatttactccaaatc 34239584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 44532059 - 44532015
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  44532059 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 44532015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 14396718 - 14396672
Alignment:
Q  116 aaggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||||| |||||||||||||||||||||   ||||||||||||||    
T  14396718 aaggatattttgactccaagagtaagtgtaatatcttactccaaatc 14396672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 3206472 - 3206516
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  3206472 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 3206516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 5562778 - 5562830
Alignment:
Q  110 aagaggaaggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    ||||||| |||||| ||||||||||||| |||||||   ||||||||||||||    
T  5562778 aagaggagggatattttgactccaagagcaagtgtaatatcttactccaaatc 5562830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 14395136 - 14395180
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  14395136 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 14395180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 18195237 - 18195281
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  18195237 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 18195281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 6946590 - 6946545
Alignment:
Q  117 aggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||    
T  6946590 aggatattttgactccaagagtaagtgtaatatcttactccaaatc 6946545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 31919744 - 31919715
Alignment:
Q  111 agaggaaggatatattgactccaagagtaa 140  Q
    ||||||||||||||||||||||||||||||    
T  31919744 agaggaaggatatattgactccaagagtaa 31919715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 1953563 - 1953519
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  1953563 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 1953519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 5045939 - 5045895
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  5045939 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 5045895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 13265512 - 13265556
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  13265512 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 13265556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 26043724 - 26043768
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  26043724 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 26043768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 478 - 522
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  478 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 11511046 - 11511090
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  11511046 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 11511090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 19386862 - 19386818
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  19386862 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 19386818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 39832294 - 39832250
Alignment:
Q  118 ggatatattgactccaagagtaagtgtatagtcttactccaaatc 162  Q
    |||||| |||||||||||||||||||||   ||||||||||||||    
T  39832294 ggatattttgactccaagagtaagtgtaatatcttactccaaatc 39832250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University