View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_22 (Length: 372)
Name: NF9486_low_22
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 267
Target Start/End: Original strand, 46245081 - 46245329
Alignment:
| Q |
19 |
catctcaacttgaatcctccaaagtcaatgaagttcagccatgaccaagccttatgtagttaaagctctcacattgaacaaagtgaacattcctgtcagc |
118 |
Q |
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| T |
46245081 |
catctcaacttgaatcctccaaagtcaatgaagttcagccatgaccaagccttgtgtagttaaagctctcacattgaacaaagtgaacattcctgtcagc |
46245180 |
T |
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| Q |
119 |
ttcatcatactgaactagtcatctccattgaagcatcatgcagttatgttcccatattgaacaaaacgtaggcttcaccatttgttcccaccccagttgc |
218 |
Q |
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| T |
46245181 |
ttcatcatactgaactagtcatctccattgaagcatcatgcagttatgttcccatattgaacaaaacgtaggcttcaccatttgttcccaccccagttgc |
46245280 |
T |
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| Q |
219 |
cgccacgacctctaccaccaccgttggaaaatctatcacttgaaaatct |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46245281 |
cgccacgacctctaccaccaccgttggaaaatctatcacttgaaaatct |
46245329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 90 - 267
Target Start/End: Original strand, 46254839 - 46255017
Alignment:
| Q |
90 |
cattgaacaaag-tgaacattcctgtcagcttcatcatactgaactagtcatctccattgaagcatcatgcagttatgttcccatattgaacaaaacgta |
188 |
Q |
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|||||||||||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
46254839 |
cattgaacaaaggttaacattcttgtcagcttcatcgtactgaactagtcatctccattgaagcatcatgcagctatgttcccatattgaacaaatagta |
46254938 |
T |
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| Q |
189 |
ggcttcaccatttgttcccaccccagttgccgccacgacctctaccaccaccgttggaaaatctatcacttgaaaatct |
267 |
Q |
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| T |
46254939 |
ggcttcaccaaatgttcccaacccagttgcccccacgacctctaccaccatcgttggaaaacctatcacttgaaaatct |
46255017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 46162168 - 46161974
Alignment:
| Q |
25 |
aacttgaatcctccaaagtcaatgaagttcagccatgaccaagccttatgtagttaaagctctcacattgaacaaag-tgaacattcctgtcagcttcat |
123 |
Q |
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|||||||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||||| |||||||||| | |||||||||||||||||||| |
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| T |
46162168 |
aacttgaatcctccaaagtcaatgaagttcaga-acaaccaaacctcgtgtagttaaagctctca--ttgaacaaaggtcaacattcctgtcagcttcat |
46162072 |
T |
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| Q |
124 |
catactgaactagtcatctccattgaagcatcatgcagttatgttccc----atattgaacaaaacgtaggcttcaccatttgttcccaccccagttg |
217 |
Q |
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| T |
46162071 |
catactgaactagtcatctccattaaagcaacatgcagttatgttcccatatatattgaacaaaaagtaggcttcgccatttgttcccaccccagttg |
46161974 |
T |
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