View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9486_low_26 (Length: 346)
Name: NF9486_low_26
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 51 - 339
Target Start/End: Original strand, 12009407 - 12009695
Alignment:
| Q |
51 |
ttacgtgcaaccttgatccttgctgtgaaatgtactggtttttatccttttattcattctcacacttttgcaccattcttgatcaccatctcaacatgat |
150 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12009407 |
ttacgtgcaaccttgatccctgctgtgaaatgtactggtttttatccttttattcattctcacacttttgcaccattcttgatcaccatctcaacatgat |
12009506 |
T |
|
| Q |
151 |
atatcttgtaagttgtaatgcttgaattcgtcacttttagctaaatatcttcagttgcctccacaatcattgctatagatgaaaagcaaacaaaattagt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12009507 |
atatcttgtaagttgtaatgcttgaattcgtcacttttagctaaatttcttcactttcctccacaatcattgctatagatgaaaagcaaacaaaattagt |
12009606 |
T |
|
| Q |
251 |
aagtttattctaaaataatgaataaaacaaaccctaaaaagaggtagaaatctaagctctctaactctcccctacttgaatctctgctt |
339 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12009607 |
aactttattctaaaataatgaataaaacaaaccctaaaaagaggtagaaatctaagctctctaactctcccctacttgaatctttgctt |
12009695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 51 - 339
Target Start/End: Original strand, 12002925 - 12003213
Alignment:
| Q |
51 |
ttacgtgcaaccttgatccttgctgtgaaatgtactggtttttatccttttattcattctcacacttttgcaccattcttgatcaccatctcaacatgat |
150 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12002925 |
ttacgtgcaaccttgatccctgctgtgaaatgtactggtttttatccttttattcattctcacacttttgcaccattcttgatcaccatctcaacatgat |
12003024 |
T |
|
| Q |
151 |
atatcttgtaagttgtaatgcttgaattcgtcacttttagctaaatatcttcagttgcctccacaatcattgctatagatgaaaagcaaacaaaattagt |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12003025 |
atatcttgtaagttgtaatgcttgaattcctcacttttagctaaatatcttcactttcctccacaatcattgctatagatgaaaaacaaacaaaattagt |
12003124 |
T |
|
| Q |
251 |
aagtttattctaaaataatgaataaaacaaaccctaaaaagaggtagaaatctaagctctctaactctcccctacttgaatctctgctt |
339 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| |||||||||||||||||| || |||||||||| |||||||||||||||| ||||| |
|
|
| T |
12003125 |
aactttattctaaaataacgaataaaacaaaccttaaaaagaggtagaaatccaaactctctaactttcccctacttgaatctttgctt |
12003213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 12002871 - 12002908
Alignment:
| Q |
18 |
acatatggccatccaaattacaaaatgaagggattacg |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12002871 |
acatatggccatccaaattacaaaatgaagggattacg |
12002908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 12009353 - 12009390
Alignment:
| Q |
18 |
acatatggccatccaaattacaaaatgaagggattacg |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12009353 |
acatatggccatccaaattacaaaatgaagggattacg |
12009390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University