View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_28 (Length: 331)
Name: NF9486_low_28
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 156 - 286
Target Start/End: Complemental strand, 42386622 - 42386493
Alignment:
| Q |
156 |
tctgatcaaaattagcatcaccatatgtttgatgttttcttctatgcctttannnnnnnattttcatcctcatatttgagtaatgttgtaattgatcacg |
255 |
Q |
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| T |
42386622 |
tctgatcaaaattagcatcaccatatgtttgatgtttagttctctgcctttatttttt-attttaatcaacatatttgagtaatgttgtaattgatcatg |
42386524 |
T |
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| Q |
256 |
ttgaaagtgtggatgcgagttccatttcaat |
286 |
Q |
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| T |
42386523 |
ttgaaagtgtggatgtgagtttcatttcaat |
42386493 |
T |
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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 1752574 - 1752463
Alignment:
| Q |
174 |
caccatatgtttgatgttttcttctatgcctttannnnnnnattttcatcctcatatttgagtaatgttgtaattgatcacgttgaaagtgtggatgcga |
273 |
Q |
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| T |
1752574 |
caccatatgtttgatgtttagttctctgcctttatttttt-attttaatcaacatatttgagtaatgttgtaattgatcatgttgaaagtgtggatgtga |
1752476 |
T |
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| Q |
274 |
gttccatttcaat |
286 |
Q |
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| T |
1752475 |
gtttcatttcaat |
1752463 |
T |
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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 41621595 - 41621645
Alignment:
| Q |
1 |
cttgtcagtagctcttagcagtatctcatcttatattgttatatacatgct |
51 |
Q |
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| T |
41621595 |
cttgtgagtagctcttagcagtatctcatcttatattgttatatatatgct |
41621645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 24460831 - 24460893
Alignment:
| Q |
64 |
atgttgatgttttttatgtgtgtatcgcaaaaatgaactcattatccatggaacgtcaccgatga |
128 |
Q |
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| T |
24460831 |
atgttgatgttttttatgtgtg--tcacaaatatgaactcattatccatgtaatgtcactgatga |
24460893 |
T |
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