View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_31 (Length: 320)
Name: NF9486_low_31
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 37176574 - 37176346
Alignment:
| Q |
12 |
gtttggtgttgaatggatttggttctgtcactgtttgaaccatacaagttacagagaatattgtgagacaagattttcgaaacttgttgttggtagagcg |
111 |
Q |
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| T |
37176574 |
gtttgatgttgaatggatttggttctgtcactgtttgaaccatacaagttacagagaatattgtgagacaagattttcgaaacttgttgttggtagagcg |
37176475 |
T |
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| Q |
112 |
gttatcaatgatgaagagaatagagaatatgctttaatgagatgtagagagatttggaatagtagatatccgtttgagtcgtttgagaatgaagcaagtt |
211 |
Q |
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| T |
37176474 |
gttatcaatgatgaagagaatagagaatatgcgttaatgcgatgtagagagatttggaatagtagatatccgtttgagtcgtttgataatgaagcaagt- |
37176376 |
T |
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| Q |
212 |
ctggttctgattctgataacgttgttgcagagggt |
246 |
Q |
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| T |
37176375 |
-----tctgattctgataacgttgttgcagagggt |
37176346 |
T |
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