View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_44 (Length: 262)
Name: NF9486_low_44
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 686342 - 686102
Alignment:
| Q |
4 |
gagtttcgtgttttgctattatttgctttatgttttgtcataaaaataaatgctctttccatggatttattttgaagttaaaacttccatattgctttaa |
103 |
Q |
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| T |
686342 |
gagtttcatgttttgctattatttgctttatgttttgtcataaaaataaatgttctttccatggatttattttgaagttaaaacttccatattgctttaa |
686243 |
T |
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| Q |
104 |
ttggctttgtgcatttaatgtacttcaaacttagtttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattcttagttaactgtaaaa |
203 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
686242 |
ttggctttgtgcatttaatgtacttcaaacttaatttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattcttagttaactgtaaaa |
686143 |
T |
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| Q |
204 |
ctgcttttaccagtttaatgacttgaattgaaatttaataa |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
686142 |
ctgcttttaccagtttaatgacttgaattgaaatttaataa |
686102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 244
Target Start/End: Complemental strand, 703806 - 703566
Alignment:
| Q |
4 |
gagtttcgtgttttgctattatttgctttatgttttgtcataaaaataaatgctctttccatggatttattttgaagttaaaacttccatattgctttaa |
103 |
Q |
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| T |
703806 |
gagtttcatgttttgctattatttgctttatgttttgtcataaaaataaatgttctttccatggatttattttgaagttaaaacttccatattgctttaa |
703707 |
T |
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| Q |
104 |
ttggctttgtgcatttaatgtacttcaaacttagtttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattcttagttaactgtaaaa |
203 |
Q |
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| T |
703706 |
ttggctttgtgcatttaatgtacttcaaacttaatttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattcttagttaactgtaaaa |
703607 |
T |
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| Q |
204 |
ctgcttttaccagtttaatgacttgaattgaaatttaataa |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
703606 |
ctgcttttaccagtttaatgacttgaattgaaatttaataa |
703566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 731831 - 732071
Alignment:
| Q |
4 |
gagtttcgtgttttgctattatttgctttatgttttgtcataaaaataaatgctctttccatggatttattttgaagttaaaacttccatattgctttaa |
103 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
731831 |
gagtttcatgttttgctattatttgctttatgttttgtcataaaaataaatgttctttccatggatttattttgaagttaaaacttccatattgctttaa |
731930 |
T |
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| Q |
104 |
ttggctttgtgcatttaatgtacttcaaacttagtttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattcttagttaactgtaaaa |
203 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
731931 |
ttggctttgtgcatttaatgtacttcaaacttaatttaatgacacgagcttatgaatttagaaattatttgtcgccaaacattcttagttaactgtaaaa |
732030 |
T |
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| Q |
204 |
ctgcttttaccagtttaatgacttgaattgaaatttaataa |
244 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
732031 |
ctgcttttaccagtttaatgacttgaattgaaatttaataa |
732071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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