View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_46 (Length: 253)
Name: NF9486_low_46
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_46 |
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| [»] scaffold0126 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 9047666 - 9047889
Alignment:
| Q |
17 |
aggaaccacagtgtttgatttgaaagccataataaccagttaggagtctgattcaagccagagattcagaaaacctttgttgtatgcaatctcaattgca |
116 |
Q |
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| T |
9047666 |
aggaaccacagtgtttgatttgaaagccagaataaccagttgggagtttgattcaagccagagattcagaaaacctttgttgtatgcaatctcaattgta |
9047765 |
T |
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| Q |
117 |
atcatagcatctaccaattcagcatagagagcattttgaggacctaagaactgaaaaaagcatcacatacatatactctcagaattacgaaaattacctc |
216 |
Q |
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| T |
9047766 |
atcatagcagctaccaactcagcatagagagcattttgaggacctaagaactgaaaaaagcatcccatacatatactctcagaattacgaaaaatacctc |
9047865 |
T |
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| Q |
217 |
ctgcagaaactttgcaagggttct |
240 |
Q |
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| T |
9047866 |
ctgcagaagctttgcaagggttct |
9047889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 22564589 - 22564540
Alignment:
| Q |
17 |
aggaaccacagtgtttgatttgaaagccataataaccagttaggagtctg |
66 |
Q |
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| T |
22564589 |
aggaaccacaatgtttgatttgaaagccagaataaccagttgggagtctg |
22564540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 24185750 - 24185828
Alignment:
| Q |
17 |
aggaaccacagtgtttgatttgaaagccataataaccagttaggagtctgattcaagccagagattcagaaaacctttg |
95 |
Q |
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| T |
24185750 |
aggaaccactgactttgacttgaaagccaaaataactaattgggagtctgattcaagccaaacattttgaaaacctttg |
24185828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 38840 - 38762
Alignment:
| Q |
17 |
aggaaccacagtgtttgatttgaaagccataataaccagttaggagtctgattcaagccagagattcagaaaacctttg |
95 |
Q |
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| T |
38840 |
aggaaccactgactttgacttgaaagccaaaataactaattgggagtctgattcaagccaaacattttgaaaacctttg |
38762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 43815 - 43737
Alignment:
| Q |
17 |
aggaaccacagtgtttgatttgaaagccataataaccagttaggagtctgattcaagccagagattcagaaaacctttg |
95 |
Q |
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| T |
43815 |
aggaaccactgactttgacttgaaagccaaaataactaattgggagtctgattcaagccaaacattttgaaaacctttg |
43737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 10012701 - 10012623
Alignment:
| Q |
17 |
aggaaccacagtgtttgatttgaaagccataataaccagttaggagtctgattcaagccagagattcagaaaacctttg |
95 |
Q |
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| T |
10012701 |
aggaaccactgactttgacttgaaagccaaaataactaattgggagtctgattcaagccatacattttgaaaacctttg |
10012623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 14960219 - 14960141
Alignment:
| Q |
17 |
aggaaccacagtgtttgatttgaaagccataataaccagttaggagtctgattcaagccagagattcagaaaacctttg |
95 |
Q |
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| T |
14960219 |
aggaaccactgactttgacttgaaagccaaaataactaattgggagtctgattcaagccaaacattttgaaaacctttg |
14960141 |
T |
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