View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_48 (Length: 249)
Name: NF9486_low_48
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_48 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 704213 - 703974
Alignment:
| Q |
6 |
tttggtggtggcatttcaagggtagccatgtttcctaaaaggcttgcaaatgaaggacttggaggttacttattcgatagtaacacttctcatttgcagt |
105 |
Q |
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| T |
704213 |
tttggtggtggcatttcaagggtagccatgtttcctaaaaggcttgcaaatgaaggacttggaggttacttattcgatagtaacacttctcatttgcagt |
704114 |
T |
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| Q |
106 |
ctaaacaagagaagttgcaaaaacttgacttatctcttaagctctaagtatagcttccttcgaccaacatgtcatttgtttgaatctggccggaagaatt |
205 |
Q |
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| T |
704113 |
ctaaacaagagaagttgcaaaaacttgacttatctcttaagctctaagtatagcttccttcgaccaacatgtcatttgtttgaatctggccggaagaatt |
704014 |
T |
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| Q |
206 |
attggtcagactttacttacttactttctgattgagctctgaat |
249 |
Q |
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| T |
704013 |
attggtcagactttactt----actttctgattgagctctgaat |
703974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 686846 - 686607
Alignment:
| Q |
6 |
tttggtggtggcatttcaagggtagccatgtttcctaaaaggcttgcaaatgaaggacttggaggttacttattcgatagtaacacttctcatttgcagt |
105 |
Q |
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| T |
686846 |
tttggtggtggcatttcaagggtagccatgtttcctaaaaggcttgcaaatgaaggacttggaggttacttattcgatagtaacacttctcatttgcagt |
686747 |
T |
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| Q |
106 |
ctaaacaagagaagttgcaaaaacttgacttatctcttaagctctaagtatagcttccttcgaccaacatgtcatttgtttgaatctggccggaagaatt |
205 |
Q |
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| T |
686746 |
ctaaacaagagaagttgcaaaaacttgacttatctcttaagctctaagtatagcttccttcgaccaacatgtcatttgtttgaatttgtccggaataatt |
686647 |
T |
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| Q |
206 |
attggtcagactttacttacttactttctgattgagctctgaat |
249 |
Q |
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| T |
686646 |
attggtcagactttactt----actttctgattgagctctgaat |
686607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 745157 - 745004
Alignment:
| Q |
6 |
tttggtggtggcatttcaagggtagccatgtttcctaaaaggcttgcaaatgaaggacttggaggttacttattcgatagtaacacttctcatttgcagt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
745157 |
tttggtggtggcatttcaagggtagccatgtttcctaaaaggcttgcaaatgaaggacttggaggttacttattcgatagtaacacttctcatttgcagt |
745058 |
T |
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| Q |
106 |
ctaaacaagagaagttgcaaaaacttgacttatctcttaagctctaagtatagc |
159 |
Q |
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| T |
745057 |
ctaaacaagagaagttgcaaaaacttgacttatctcttaagctctaagtatagc |
745004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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