View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_53 (Length: 240)
Name: NF9486_low_53
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 35377500 - 35377284
Alignment:
| Q |
9 |
ttggagtttataagaaagtggtgaggatccaaagagactttctttggggtggagttgggaatgggaacaaattggcttgagttaagtggaggaaaatttg |
108 |
Q |
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| T |
35377500 |
ttggagtttataagaaagtggtgaggatccaaagagactttctttggggtggagttgggaatgggaacaaattggcttgagttaagtggaggaaaatttg |
35377401 |
T |
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| Q |
109 |
tcagccaaaagctaaagggagaatgggagttaaggatgttagaatggtaaacattagcaaagttgaaatggcatctccttcgatgtgatcaactgttatg |
208 |
Q |
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| T |
35377400 |
tcagccaaaagctaaagggagaatgggagttaaggatgttagaatggtaaacattagcaaagttgaaatggcatctccttcgatgtgatcaactgttatg |
35377301 |
T |
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| Q |
209 |
gaaggaggtgctgattg |
225 |
Q |
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| T |
35377300 |
gaaggaggtgctgattg |
35377284 |
T |
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