View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9486_low_64 (Length: 219)

Name: NF9486_low_64
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9486_low_64
NF9486_low_64
[»] chr2 (1 HSPs)
chr2 (1-206)||(3110420-3110624)
[»] chr7 (2 HSPs)
chr7 (59-104)||(32888971-32889016)
chr7 (42-94)||(1791416-1791468)
[»] chr3 (3 HSPs)
chr3 (59-103)||(8936736-8936780)
chr3 (59-94)||(1138433-1138468)
chr3 (53-94)||(38692426-38692467)
[»] chr1 (2 HSPs)
chr1 (59-103)||(6025952-6025996)
chr1 (59-92)||(1118943-1118976)
[»] chr6 (2 HSPs)
chr6 (59-109)||(2732971-2733021)
chr6 (59-92)||(2730831-2730864)
[»] chr8 (2 HSPs)
chr8 (59-103)||(26445499-26445543)
chr8 (76-104)||(34620045-34620073)
[»] chr4 (1 HSPs)
chr4 (59-95)||(47789198-47789234)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 3110624 - 3110420
Alignment:
Q  1 gcaatagtgttacaacatggcagaatttgaacaaacaattgttgttgggcattacacaatttagtacaaagcgttgtcaaatagtggctatagcggcgct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3110624 gcaatagtgttacaacatggcagaatttgaacaaacaattgttgttgggcattacactatttagtacaaagcgttgtcaaatagtggctatagcggcgct 3110525  T
Q  101 ataatactaaaagtgttttgaataaaccgctattttccgcaatctacgatggacaacactattacagatcaaccaaattttccttaaactaatcccatgc 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3110524 ataatact-aaagtgttttgaataaaccgctattttccgcaatctacgatggacaacactattacagatcaaccaaattttccttaaactaatcccatgc 3110426  T
Q  201 cctttg 206  Q
    ||||||    
T  3110425 cctttg 3110420  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 32888971 - 32889016
Alignment:
Q  59 atttagtacaaagcgttgtcaaatagtggctatagcggcgctataa 104  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||    
T  32888971 atttagtacaaagtattgtcaaatagtggctattgcggcgctataa 32889016  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 1791468 - 1791416
Alignment:
Q  42 ttgttgggcattacacaatttagtacaaagcgttgtcaaatagtggctatagc 94  Q
    |||||| ||||| |||||||||||||| ||  ||||||||||| |||||||||    
T  1791468 ttgttgtgcatttcacaatttagtacagagtattgtcaaatagcggctatagc 1791416  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 8936780 - 8936736
Alignment:
Q  59 atttagtacaaagcgttgtcaaatagtggctatagcggcgctata 103  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||    
T  8936780 atttagaacaaagtgttgtcaaataatggctatagcggcgctata 8936736  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 1138468 - 1138433
Alignment:
Q  59 atttagtacaaagcgttgtcaaatagtggctatagc 94  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1138468 atttagtacaaagagttgtcaaatagtggctatagc 1138433  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 38692467 - 38692426
Alignment:
Q  53 tacacaatttagtacaaagcgttgtcaaatagtggctatagc 94  Q
    ||||| ||||||||||||| |||||||||||| |||||||||    
T  38692467 tacacgatttagtacaaagtgttgtcaaatagcggctatagc 38692426  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 6025996 - 6025952
Alignment:
Q  59 atttagtacaaagcgttgtcaaatagtggctatagcggcgctata 103  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||    
T  6025996 atttagtacaaaatgttgtcaaatagtggctatagcagcgctata 6025952  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 1118943 - 1118976
Alignment:
Q  59 atttagtacaaagcgttgtcaaatagtggctata 92  Q
    ||||||||||||| ||||||||||||||||||||    
T  1118943 atttagtacaaagtgttgtcaaatagtggctata 1118976  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Original strand, 2732971 - 2733021
Alignment:
Q  59 atttagtacaaagcgttgtcaaatagtggctatagcggcgctataatacta 109  Q
    ||||||||||||  ||||||||||||  ||||||| |||||||||||||||    
T  2732971 atttagtacaaaatgttgtcaaatagcagctatagaggcgctataatacta 2733021  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 2730864 - 2730831
Alignment:
Q  59 atttagtacaaagcgttgtcaaatagtggctata 92  Q
    ||||||||||||| ||||||||||||||||||||    
T  2730864 atttagtacaaagtgttgtcaaatagtggctata 2730831  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 26445543 - 26445499
Alignment:
Q  59 atttagtacaaagcgttgtcaaatagtggctatagcggcgctata 103  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||    
T  26445543 atttagtacaaagcgttgtcaaatagcagttatagtggcgctata 26445499  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 34620045 - 34620073
Alignment:
Q  76 gtcaaatagtggctatagcggcgctataa 104  Q
    |||||||||||||||||||||||||||||    
T  34620045 gtcaaatagtggctatagcggcgctataa 34620073  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 47789198 - 47789234
Alignment:
Q  59 atttagtacaaagcgttgtcaaatagtggctatagcg 95  Q
    ||||||||||||  |||||||||||||||||||||||    
T  47789198 atttagtacaaactgttgtcaaatagtggctatagcg 47789234  T

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