View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_65 (Length: 216)
Name: NF9486_low_65
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_65 |
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Alignment Details
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 29039444 - 29039260
Alignment:
| Q |
16 |
tcgtgtttcaaaagaagaatgaaaggatagaaatcctagaaagaaaaaacacaatacacatttttggtttaaatttatctatttttcatgtctgcaat-t |
114 |
Q |
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| T |
29039444 |
tcgtgtttcaaaagaagaatgaaaggatagaaatcctagaaagaaaaaacacaatagacatttttggtttaaatttatctatttttcatgtctgcaattt |
29039345 |
T |
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| Q |
115 |
tttccgtcgt--aagnnnnnnnngtctgcaatttttacattatattttccatccttgaaatgcttatgcttgaataagatcctaa |
197 |
Q |
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||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29039344 |
tttccatcgtaaaaaaaaaaaatgtctgcaatttttacattatattttccatccttgaaatgcttatgcttgaataagatcctaa |
29039260 |
T |
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