View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_66 (Length: 216)
Name: NF9486_low_66
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_66 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7775114 - 7774899
Alignment:
| Q |
1 |
aaccattcttgttctaacaaaggactcaattaacttctttaaccaaatgagacaccagctttcttgttcatgtaacttattatgatatttgtaccgtatt |
100 |
Q |
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| T |
7775114 |
aaccattcttgttctaacaaaggactcaattaaattctttaaccaaatgagacaccagctttcttgttcatgtaacttattatgatatttgtaccgtatt |
7775015 |
T |
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| Q |
101 |
ggagtaatctgtttttctttaaggactgtgtgctaatggtttaatagcacacactaaagactaatttgttgatgaaattgttagtaattataacgcaatt |
200 |
Q |
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| T |
7775014 |
ggagtaatctgtttttctttaaggactgtgtgctaatggtttaatagcacacactaaagactaatttgttgatgaaattgttagtaattataacgcaatt |
7774915 |
T |
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| Q |
201 |
atagttactaacaaat |
216 |
Q |
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||| |||||||||||| |
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| T |
7774914 |
ataattactaacaaat |
7774899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 7769519 - 7769439
Alignment:
| Q |
28 |
aattaacttctttaaccaaatgagacaccagctttcttgttcatgtaacttattatgatatttgtaccgtattggagtaat |
108 |
Q |
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|||||| |||||||| ||||||| | ||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
7769519 |
aattaaattctttaagcaaatgaaagaccagttttcttgttcatataacttattatcatatttgtaccgtattggagtaat |
7769439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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