View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9486_low_7 (Length: 527)
Name: NF9486_low_7
Description: NF9486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9486_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 1110868 - 1110361
Alignment:
| Q |
1 |
aattgtgccaagtcctagaacacctaagggaaccaatattccttcaaagcctccaactagagtactagaagaacctataattagagacaagaaggttcct |
100 |
Q |
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| T |
1110868 |
aattgtgccaagtcctagaacacctaagggaaccaatattccttcaaagcctccaactagagtactagaagaacctatagttagagacaagaaggttcct |
1110769 |
T |
|
| Q |
101 |
tcatctccaagtaatattgtgacagggttaaatgacttgaacaaattgaaggaacaaaaaggtacccaagatacttttccaagtcaaagtcctaagggaa |
200 |
Q |
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| T |
1110768 |
tcatctccaagtaatattgtgacagggttaaatgacttgaacaaattgaaggaacaaaaaggtacccaagatacttttccaagtcaaagtcctaagggaa |
1110669 |
T |
|
| Q |
201 |
aattgaaagctttagaaccctttgtagaatctagacctcaaaatgtttatgaagaaaataatgtgccaaaaggaaaatcccaagcaataggtgcaaaggc |
300 |
Q |
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| T |
1110668 |
aattgaaggctttagaaccctttgtagaatctagacctcaaaatgtttatgaggaaaataatgtgccaaaaggaaaatcccaagcaataggtgcaaaggc |
1110569 |
T |
|
| Q |
301 |
tcaaaagagccaagaggaaattgagccaagatttggatttaaaatggatcctataaagcaaatagatgatgaaaaaattcaagaggaaaataggaaaaag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1110568 |
tcaaaagagccaagaggaaattgagccaagatttggatttaaaatggatcctataaagcaaatagatgatgaaaaaattcaagaggaaaataggaaaaag |
1110469 |
T |
|
| Q |
401 |
tcgatattagaaacaattagaaaacaattgcacgaggacgaaaagaaaagtgtcgcaaataagaaaattgaagaagataagaagacttatgagtcaagca |
500 |
Q |
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| T |
1110468 |
tcgatattagaaacaattagaaaacaattgcacgaggacgaaaagaaaagtgtcgcaaataagaaaattgaagaagataagaagacttatgagtcaagca |
1110369 |
T |
|
| Q |
501 |
agcttgat |
508 |
Q |
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|||||||| |
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| T |
1110368 |
agcttgat |
1110361 |
T |
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