View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9487_low_10 (Length: 244)
Name: NF9487_low_10
Description: NF9487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9487_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 42415486 - 42415280
Alignment:
| Q |
20 |
aatggcaaaaaatgacatgggctttattccttcttgggaggataattgtgcttggctattggactgacaattcttcggtattcatgattttgggtttact |
119 |
Q |
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| T |
42415486 |
aatggcaaaaaatgacatgggctttattccttcttgggaggataattgtgcttggctattggactgtcaattcttcggtattcatgattttgggtttact |
42415387 |
T |
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| Q |
120 |
gtatcaacgagatagagtcaagtacactgcaaactatagggatgaaggaacatattcattagtatacgaataagtacatctggtggtgaggtaaaacggc |
219 |
Q |
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| T |
42415386 |
gtatcaacgagatagagtcaagtacactgcaaactatagggatgaaggaacatattcattagtatacgaataagtacatctggtggtgagggaaaacggc |
42415287 |
T |
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| Q |
220 |
ttcaaag |
226 |
Q |
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||||||| |
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| T |
42415286 |
ttcaaag |
42415280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 42422324 - 42422155
Alignment:
| Q |
25 |
caaaaaatgacatgggctttattccttcttgggaggataattgtgcttggctattggactgacaattcttcggtattcatgattttgggttta-ctgtat |
123 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||| || || || ||| ||||||||||| ||||| |||| |||| | |
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| T |
42422324 |
caaaaaatgacataaattttatgccttcttgggaggataattgtgcttggctatttgattgtcaggactttggtattcatgactttggatttaactgttt |
42422225 |
T |
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| Q |
124 |
caacgagatagagtcaagtacactgcaaactatagggatgaaggaacatattcattagtatacgaataag |
193 |
Q |
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||| ||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| ||| ||||||| |
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| T |
42422224 |
caatgagattgagtcaagtacactgcaaactatagggatcaaggaaaataaacattagcatatgaataag |
42422155 |
T |
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