View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9487_low_11 (Length: 240)

Name: NF9487_low_11
Description: NF9487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9487_low_11
NF9487_low_11
[»] chr5 (5 HSPs)
chr5 (1-109)||(32267446-32267554)
chr5 (8-109)||(41901562-41901663)
chr5 (122-225)||(32267297-32267400)
chr5 (1-106)||(41889574-41889679)
chr5 (116-204)||(41901703-41901791)
[»] chr8 (7 HSPs)
chr8 (1-109)||(27922479-27922587)
chr8 (8-92)||(18315300-18315384)
chr8 (122-214)||(27922341-27922433)
chr8 (1-73)||(17636421-17636493)
chr8 (2-90)||(17628035-17628123)
chr8 (36-92)||(32151289-32151345)
chr8 (6-106)||(34936188-34936288)
[»] chr4 (12 HSPs)
chr4 (3-84)||(55908750-55908831)
chr4 (6-106)||(8184055-8184155)
chr4 (8-92)||(553467-553551)
chr4 (1-85)||(7307855-7307939)
chr4 (8-85)||(1548451-1548528)
chr4 (8-85)||(8187118-8187195)
chr4 (8-92)||(1524513-1524597)
chr4 (36-92)||(558486-558542)
chr4 (2-85)||(546908-546991)
chr4 (8-97)||(570334-570423)
chr4 (1-66)||(1519162-1519227)
chr4 (42-90)||(370910-370958)
[»] chr2 (2 HSPs)
chr2 (3-84)||(1037686-1037767)
chr2 (1-92)||(32785792-32785883)
[»] chr3 (3 HSPs)
chr3 (35-106)||(51113835-51113906)
chr3 (1-85)||(51120913-51120997)
chr3 (8-90)||(13470759-13470841)
[»] chr6 (13 HSPs)
chr6 (5-85)||(14820688-14820768)
chr6 (8-90)||(6585264-6585346)
chr6 (8-85)||(6394859-6394936)
chr6 (9-82)||(6432159-6432232)
chr6 (5-110)||(14818352-14818457)
chr6 (6-90)||(6402850-6402934)
chr6 (8-100)||(11936302-11936394)
chr6 (8-100)||(11948282-11948374)
chr6 (8-72)||(12102274-12102338)
chr6 (8-90)||(10579763-10579845)
chr6 (9-90)||(6409996-6410077)
chr6 (8-73)||(28935056-28935121)
chr6 (6-106)||(19632413-19632513)
[»] scaffold0295 (1 HSPs)
scaffold0295 (3-106)||(646-749)
[»] chr1 (3 HSPs)
chr1 (35-73)||(7554495-7554533)
chr1 (1-77)||(52082584-52082660)
chr1 (8-77)||(19468526-19468595)
[»] scaffold0041 (1 HSPs)
scaffold0041 (39-85)||(39179-39225)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 7e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 32267554 - 32267446
Alignment:
Q  1 caaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaa 100  Q
    |||||| ||||| |||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  32267554 caaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaa 32267455  T
Q  101 aattgtaat 109  Q
    |||||||||    
T  32267454 aattgtaat 32267446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 41901562 - 41901663
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaaaattgta 107  Q
    |||||||||||||||||| ||| |  ||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||| || ||||||    
T  41901562 gaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgtcacttcaagattgta 41901661  T
Q  108 at 109  Q
    ||    
T  41901662 at 41901663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 122 - 225
Target Start/End: Complemental strand, 32267400 - 32267297
Alignment:
Q  122 caactgagaaagattggtttgtatggttgtcagaaatcccatgctgatgttgttttttcgatggtatcttcaaggccgtcgttaagaaagatatcgactc 221  Q
    ||||| |||||||||  ||| ||||||||||||||   |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| || |||    
T  32267400 caacttagaaagattaatttctatggttgtcagaaggtccatgctgattttgtttcttcgatggtatcttcaaggccgtcgttgagaaagataacggctc 32267301  T
Q  222 ctcc 225  Q
    ||||    
T  32267300 ctcc 32267297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 41889574 - 41889679
Alignment:
Q  1 caaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaa 100  Q
    |||||| |||||||||||||| ||| ||| |  ||||||||||||| ||||||||| |||||||||||||||||| | ||||| |||| ||| |||||||    
T  41889574 caaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaa 41889673  T
Q  101 aattgt 106  Q
    ||||||    
T  41889674 aattgt 41889679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 41901703 - 41901791
Alignment:
Q  116 tgtacacaactgagaaagattggtttgtatggttgtcagaaatcccatgctgatgttgttttttcgatggtatcttcaaggccgtcgtt 204  Q
    ||||| ||| ||||||||||| ||||| ||||||||   |||   |||||| ||||||||| || |||||||| |||||| ||||||||    
T  41901703 tgtacgcaattgagaaagattagtttgaatggttgttttaaagtacatgctaatgttgtttctttgatggtattttcaagaccgtcgtt 41901791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 27922587 - 27922479
Alignment:
Q  1 caaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaa 100  Q
    |||||| |||||||||||||||||| ||| |   ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||    
T  27922587 caaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaa 27922488  T
Q  101 aattgtaat 109  Q
    |||||||||    
T  27922487 aattgtaat 27922479  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 18315300 - 18315384
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgt 92  Q
    |||||||||||||||||||||| |  |||||||||||||||||| ||| ||||||||||||||||| ||  ||||||| ||||||    
T  18315300 gaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttgcaactgt 18315384  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 27922433 - 27922341
Alignment:
Q  122 caactgagaaagattggtttgtatggttgtcagaaatcccatgctgatgttgttttttcgatggtatcttcaaggccgtcgttaagaaagata 214  Q
    ||||||||||||||| ||||| |||||||||| |||   |||||| || |||||| ||||||||||||||||||||| ||||| ||| |||||    
T  27922433 caactgagaaagattagtttggatggttgtcataaagtacatgctaatattgtttcttcgatggtatcttcaaggccatcgttgagacagata 27922341  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17636421 - 17636493
Alignment:
Q  1 caaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgt 73  Q
    |||||| |||||||||||||||||||| | |  |||||| ||||||||| | ||| |||||||||||||||||    
T  17636421 caaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 17628035 - 17628123
Alignment:
Q  2 aaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaact 90  Q
    ||||| ||||||||||||||||||||||    |||||||||| |||||||   | |||||||||||| ||||| || ||| ||||||||    
T  17628035 aaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttgggctcttgaaact 17628123  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 32151345 - 32151289
Alignment:
Q  36 ttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgt 92  Q
    ||||||||||| |||| ||| ||||||||||||||||| ||| ||||||| ||||||    
T  32151345 ttgatgatgaaacactctatgtgatctcaaagagttgtagtgggcttttgcaactgt 32151289  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 34936188 - 34936288
Alignment:
Q  6 tagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaaaattg 105  Q
    ||||||||||| |||||||| ||| |  |||||||||| || |||| |||   ||| ||||||||||| ||| ||||||| |||| | |||| |||||||    
T  34936188 tagaggtgttggacttgtcatatacaagagttgatgataaaacactctatgccatcgcaaagagttgtcgtgggcttttgcaactattacttcaaaattg 34936287  T
Q  106 t 106  Q
    |    
T  34936288 t 34936288  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 55908750 - 55908831
Alignment:
Q  3 aattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgctttt 84  Q
    ||||||||||||| ||||||||||||| ||  |||||||||||| |||| |||||||||||||||| |||||||| ||||||    
T  55908750 aattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 55908831  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 8184055 - 8184155
Alignment:
Q  6 tagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaaaattg 105  Q
    |||||||||||||||||||||||| |  ||||||||||  |||||| |||   ||||||||||||||||||| ||||||| |||||| |||  |||||||    
T  8184055 tagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggcttttggaactgttactggaaaattg 8184154  T
Q  106 t 106  Q
    |    
T  8184155 t 8184155  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 553551 - 553467
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgt 92  Q
    ||||||||||||||||||  || |  ||||||||||||||||||| || |||| ||||||||||||| || ||||||| ||||||    
T  553551 gaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaactgt 553467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 7307939 - 7307855
Alignment:
Q  1 caaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttg 85  Q
    |||||| ||||| |||||||||||| ||| |  ||||||||||||||||||   ||||||||||||||||||||||  |||||||    
T  7307939 caaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggcttttg 7307855  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 1548451 - 1548528
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttg 85  Q
    |||||||||||||||||||||| |    ||||||||||| ||||  || ||||||||||||||||||||| |||||||    
T  1548451 gaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttg 1548528  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 8187118 - 8187195
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttg 85  Q
    |||||||||||||||||||||| |  |||||||||| || ||||||||   || |||||||||||||||| |||||||    
T  8187118 gaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtgggcttttg 8187195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 1524513 - 1524597
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgt 92  Q
    ||||||||||| ||||||| || |   |||||||||||| |||| |||||||||||| |||||||| ||| ||||||| ||||||    
T  1524513 gaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaactgt 1524597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 558542 - 558486
Alignment:
Q  36 ttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgt 92  Q
    ||||||||||||||||  || ||||||||||||||||| ||| ||||||| ||||||    
T  558542 ttgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaactgt 558486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 546991 - 546908
Alignment:
Q  2 aaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttg 85  Q
    ||||| |||||| |||||||||||| || |   ||  |||||||| |||| ||| ||||||||||||||||||||| |||||||    
T  546991 aaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtgggcttttg 546908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 570423 - 570334
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcactt 97  Q
    |||||||||||||||||| ||| |  ||||||| | |||| ||| ||| |||| |||||||||||| | | ||||||| |||||| ||||    
T  570423 gaggtgttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcgggcttttgcaactgttactt 570334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1519162 - 1519227
Alignment:
Q  1 caaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaa 66  Q
    |||| |||||||||||||||||||||||| |   ||||||||  ||||||| ||| ||||||||||    
T  1519162 caaactagaggtgttgaacttgtcacatacaagggttgatgaataagcactctatgtgatctcaaa 1519227  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 370958 - 370910
Alignment:
Q  42 atgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaact 90  Q
    ||||||||||| || ||||||||||||||||||||  ||||||| ||||    
T  370958 atgaagcacttcatgtgatctcaaagagttgttgtcggcttttgcaact 370910  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 1037686 - 1037767
Alignment:
Q  3 aattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgctttt 84  Q
    ||||||||||||| ||||||||||||| ||  |||||||||||| |||| |||||||||||||||| |||||||| ||||||    
T  1037686 aattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggctttt 1037767  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 32785792 - 32785883
Alignment:
Q  1 caaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgt 92  Q
    |||| |||||||||||||||||||||||| |  | |||||||||||||||||||| |||||||||  |||| |  || ||||||||||||||    
T  32785792 caaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaataagttttcatgggcttttgaaactgt 32785883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 51113835 - 51113906
Alignment:
Q  35 gttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaaaattgt 106  Q
    |||||||||||| |||| ||| ||||||| ||||||||||||| ||||||| |||||| ||| |||||||||    
T  51113835 gttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgt 51113906  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 51120913 - 51120997
Alignment:
Q  1 caaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttg 85  Q
    |||||| ||||||||||||||||| |||| |  |||||||||||||  ||| ||| | ||||||||||||||| ||| |||||||    
T  51120913 caaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttg 51120997  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 13470759 - 13470841
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaact 90  Q
    |||||||||||||||||| ||| |   ||| ||||| || |||| |||||||||||||||| |||||||| ||||||| ||||    
T  13470759 gaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaact 13470841  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 14820768 - 14820688
Alignment:
Q  5 ttagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttg 85  Q
    ||||||||||||||||| ||| ||| |   |||||| ||||| |||||||||||||||| |||| |||||||| |||||||    
T  14820768 ttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttg 14820688  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 6585264 - 6585346
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaact 90  Q
    ||||| |||||||||||| ||| |   |||||||||||| |||| ||| |||||||||||||||||| || ||||||| ||||    
T  6585264 gaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaact 6585346  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 6394936 - 6394859
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttg 85  Q
    |||||||||||||||||| ||| |   |||||||||||| | |||| | |||||||||||| |||||||| |||||||    
T  6394936 gaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtgggcttttg 6394859  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 6432232 - 6432159
Alignment:
Q  9 aggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgctt 82  Q
    ||||||||||||||||| ||| |   |||||||||||| |||||||| |||||| ||||| |||||||| ||||    
T  6432232 aggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggctt 6432159  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 14818457 - 14818352
Alignment:
Q  5 ttagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaaaatt 104  Q
    ||||||||||||||||| ||| ||| |   |||||| ||||| |||||||||||||||| |||| ||||| || |||||||  | | | |||| ||||||    
T  14818457 ttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctgggcttttgcgattattacttgaaaatt 14818358  T
Q  105 gtaata 110  Q
    ||||||    
T  14818357 gtaata 14818352  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 6402934 - 6402850
Alignment:
Q  6 tagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaact 90  Q
    |||| ||||||||||||||| |||     |||||||||||| |||| ||| |||||||||||| |||| ||| ||||||||||||    
T  6402934 tagaagtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaact 6402850  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 11936302 - 11936394
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaa 100  Q
    ||||||||| ||||||||  || |  |||||| ||| || |||| |||  |||||||||||||||| ||| ||||||| ||||||||||||||    
T  11936302 gaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtcacttaaa 11936394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 11948282 - 11948374
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaa 100  Q
    ||||||||| ||||||||  || |  |||||| ||| || |||| |||  |||||||||||||||| ||| ||||||| ||||||||||||||    
T  11948282 gaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtcacttaaa 11948374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 12102338 - 12102274
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttg 72  Q
    |||||||||||||||||||||| || ||||||| | |||| ||| ||| |||| |||||||||||    
T  12102338 gaggtgttgaacttgtcacatacatgagttgataacgaagaactctatctgatttcaaagagttg 12102274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 10579763 - 10579845
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaact 90  Q
    |||||||||||||||||| ||| |  |||||||||| || |||| |||  ||||||||||| |||||||  ||||||| ||||    
T  10579763 gaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgtcggcttttggaact 10579845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 6410077 - 6409996
Alignment:
Q  9 aggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaact 90  Q
    |||||||||||| |||| ||| |   |||||||||||| | |||||| |||||||||||| |||||||  ||||||| ||||    
T  6410077 aggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgtcggcttttgcaact 6409996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 28935121 - 28935056
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgt 73  Q
    |||||||||||||||||||||| |  |||||| |||||||||||   | |||| ||||||||||||    
T  28935121 gaggtgttgaacttgtcacatacaagagttgacgatgaagcactcagtgtgatttcaaagagttgt 28935056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 19632513 - 19632413
Alignment:
Q  6 tagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaaaattg 105  Q
    ||||||||||| |||||||  ||| |   |||||||||||   ||||| | |||||||||||| |||||||| ||||||| |||| | ||| ||||||||    
T  19632513 tagaggtgttggacttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattg 19632414  T
Q  106 t 106  Q
    |    
T  19632413 t 19632413  T

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Target: scaffold0295 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 106
Target Start/End: Original strand, 646 - 749
Alignment:
Q  3 aattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtgtgcttttgaaactgtcacttaaaaa 102  Q
    ||||||||||||| ||||||||||||| |   || ||||||||| |||| ||||||||||| |||| |||||||| ||| ||  |||||| |||  ||||    
T  646 aattagaggtgtttaacttgtcacatacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaactgttactggaaaa 745  T
Q  103 ttgt 106  Q
    ||||    
T  746 ttgt 749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 7554533 - 7554495
Alignment:
Q  35 gttgatgatgaagcactttatatgatctcaaagagttgt 73  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  7554533 gttgatgatgaagcactctatatgatctcaaagagttgt 7554495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 52082660 - 52082584
Alignment:
Q  1 caaattagaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtg 77  Q
    |||||| |||||||||||||||||| | | |  | ||||||||||| || | ||| |||||||||||||||||||||    
T  52082660 caaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtg 52082584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 19468526 - 19468595
Alignment:
Q  8 gaggtgttgaacttgtcacatagatcagttgatgatgaagcactttatatgatctcaaagagttgttgtg 77  Q
    ||||||||||| |||||| ||| |   |||||||||||| |||||||| ||||||||||||  |||||||    
T  19468526 gaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaactgttgtg 19468595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Complemental strand, 39225 - 39179
Alignment:
Q  39 atgatgaagcactttatatgatctcaaagagttgttgtgtgcttttg 85  Q
    |||||||| |||||||| ||||||||||||||||| ||| |||||||    
T  39225 atgatgaaacactttatgtgatctcaaagagttgtagtgggcttttg 39179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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