View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9487_low_13 (Length: 230)

Name: NF9487_low_13
Description: NF9487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9487_low_13
NF9487_low_13
[»] chr2 (7 HSPs)
chr2 (16-132)||(41650810-41650926)
chr2 (166-214)||(43212978-43213026)
chr2 (166-213)||(41650729-41650776)
chr2 (166-213)||(41655087-41655134)
chr2 (166-213)||(43227375-43227422)
chr2 (64-134)||(43227265-43227335)
chr2 (175-213)||(43223851-43223889)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 41650926 - 41650810
Alignment:
Q  16 agaggatattgtagtgacttcgtcgcatttcaaacttatttcaaaagcagtacattaaacaacgtataaagattatagcagagcatgaagaaatcacatg 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  41650926 agaggatattgtagtgacttcgtcgcatttcaaatttatttcaaaagcagtacattaaacaaagtataaagattatagcagagcatgaagaaatcacata 41650827  T
Q  116 tattaaagagaatgaac 132  Q
    |||| ||||||||||||    
T  41650826 tattgaagagaatgaac 41650810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 43212978 - 43213026
Alignment:
Q  166 ccatacttgtaactctttttcatgctccttgaggatcttagcagcacct 214  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||    
T  43212978 ccatacctgtaactctttttcatgctccttgagaatcttagcagcacct 43213026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 41650776 - 41650729
Alignment:
Q  166 ccatacttgtaactctttttcatgctccttgaggatcttagcagcacc 213  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  41650776 ccatacttgtaactctttttcatgttccttgagaatcttagcagcacc 41650729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 213
Target Start/End: Complemental strand, 41655134 - 41655087
Alignment:
Q  166 ccatacttgtaactctttttcatgctccttgaggatcttagcagcacc 213  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  41655134 ccatacctgtaactgtttttcatgttccttgaggatcttagcagcacc 41655087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 213
Target Start/End: Original strand, 43227375 - 43227422
Alignment:
Q  166 ccatacttgtaactctttttcatgctccttgaggatcttagcagcacc 213  Q
    ||||||||||||||||||||| |||| |||||||||||| ||||||||    
T  43227375 ccatacttgtaactctttttcgtgctgcttgaggatctttgcagcacc 43227422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 134
Target Start/End: Original strand, 43227265 - 43227335
Alignment:
Q  64 agtacattaaacaacgtataaagattatagcagagcatgaagaaatcacatgtattaaagagaatgaacat 134  Q
    |||||||||||||| | ||||| || || |||||||||||||||||| |||  ||| ||||||||||||||    
T  43227265 agtacattaaacaaagcataaaaataattgcagagcatgaagaaatctcatacattgaagagaatgaacat 43227335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 43223851 - 43223889
Alignment:
Q  175 taactctttttcatgctccttgaggatcttagcagcacc 213  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  43223851 taactgtttttcatgttccttgaggatcttagcagcacc 43223889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University