View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9487_low_2 (Length: 387)
Name: NF9487_low_2
Description: NF9487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9487_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 33679682 - 33679306
Alignment:
| Q |
1 |
cttctttaacgctgttaaaaggacaagttcatggaggcaaaaataagactcacaataacgcggagagaaaaccgccaccccaattttgctctccatgact |
100 |
Q |
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|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33679682 |
cttcttcaacgccgttaaaagggcaagttcatggaggcaaaaataagactcacaataacgcggagagaaaaccgccaccccaattttgctctccatgact |
33679583 |
T |
|
| Q |
101 |
cccccattgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaaccatgccttttaaggttgtcataaagaagag |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33679582 |
cccccgttgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaaccatgccttttaaggttgtcataaagaagag |
33679483 |
T |
|
| Q |
201 |
ttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcaaaggtcttgccatcatttgtgtaattttcctttgatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
33679482 |
ttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcatacgtcttgccatcatttgtgtaattttcctttgatg |
33679383 |
T |
|
| Q |
301 |
gcttaataagctcttcattgccgaagaagtttgcatgttgatacaataaagggtgtgtggtagtactttaacctttg |
377 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
33679382 |
gcttaataagctcttcattgccaaagaagtttgcatattgatacaataaagggtgtgtggttgtactttaacctttg |
33679306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 33687149 - 33686773
Alignment:
| Q |
1 |
cttctttaacgctgttaaaaggacaagttcatggaggcaaaaataagactcacaataacgcggagagaaaaccgccaccccaattttgctctccatgact |
100 |
Q |
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|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33687149 |
cttcttcaacgccgttaaaagggcaagttcatggaggcaaaaataagactcacaataacgcggagagaaaaccgccaccccaattttgctctccatgact |
33687050 |
T |
|
| Q |
101 |
cccccattgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaaccatgccttttaaggttgtcataaagaagag |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33687049 |
cccccgttgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaaccatgccttttaaggttgtcataaagaagag |
33686950 |
T |
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| Q |
201 |
ttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcaaaggtcttgccatcatttgtgtaattttcctttgatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
33686949 |
ttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcatacgtcttgccatcatttgtgtaattttcctttgatg |
33686850 |
T |
|
| Q |
301 |
gcttaataagctcttcattgccgaagaagtttgcatgttgatacaataaagggtgtgtggtagtactttaacctttg |
377 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
33686849 |
gcttaataagctcttcattgccaaagaagtttgcatattgatacaataaagggtgtgtggttgtactttaacctttg |
33686773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 33704203 - 33703827
Alignment:
| Q |
1 |
cttctttaacgctgttaaaaggacaagttcatggaggcaaaaataagactcacaataacgcggagagaaaaccgccaccccaattttgctctccatgact |
100 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33704203 |
cttcttcaacgccgttaaaagggcaagttcatggaggcaaaaataagactcacaataacgcggagagaaaaccgccaccccaattttgctctccatgact |
33704104 |
T |
|
| Q |
101 |
cccccattgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaaccatgccttttaaggttgtcataaagaagag |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33704103 |
cccccgttgattttctcaaataatttgtcccctggcttcatgtttttctcatccaagaaagggttgaaaccatgccttttaaggttgtcataaagaagag |
33704004 |
T |
|
| Q |
201 |
ttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcaaaggtcttgccatcatttgtgtaattttcctttgatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
33704003 |
ttgctaccgttctctttgtgtccgggcttctatggttgaggaacacatcgcatggctccatcatacgtcttgccatcatttgtgtaattttcctttgatg |
33703904 |
T |
|
| Q |
301 |
gcttaataagctcttcattgccgaagaagtttgcatgttgatacaataaagggtgtgtggtagtactttaacctttg |
377 |
Q |
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|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
33703903 |
gcttaataagctcttcattgccaaagaagtttgcatattgatacaataaagggtgtgtggttgtactttaacctttg |
33703827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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