View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_high_9 (Length: 234)
Name: NF9488_high_9
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 47581440 - 47581642
Alignment:
| Q |
13 |
attatactgtgtattctttggctacgtgtgtaagttctcgctaactaattgtctttgtaagatttttggttaggtcattgtcagcgtatagaaattaaca |
112 |
Q |
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| T |
47581440 |
attatactgtatattctttggctacgtgtgtaagttctcgctaactaattgtctttgtaagatttttggttaggtcactgtcagcgtatagaaattaaca |
47581539 |
T |
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| Q |
113 |
tttgacaagatttttgtaacttgggatatgtagcttctgcgggtcttggttttctccagttctgtaatctcaatagtttcagaaccaaatttgtgttagg |
212 |
Q |
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| T |
47581540 |
tttgacaagatttttgtaacttggaatatgtagcttctgcgggtcttggttttctccagttctgtaatctcaatagtttcagaaccaaatttgtgttagg |
47581639 |
T |
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| Q |
213 |
ctt |
215 |
Q |
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||| |
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| T |
47581640 |
ctt |
47581642 |
T |
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Back To:
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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 8685473 - 8685549
Alignment:
| Q |
139 |
tatgtagcttctgcgggtcttggttttctccagttctgtaatctcaatagtttcagaaccaaatttgtgttaggctt |
215 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| ||||||| |
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| T |
8685473 |
tatgtagcttctgctggtcttggttttatccagttctgtaacctcaacagtttcagaaccaaatttgtgctaggctt |
8685549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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