View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_1 (Length: 761)
Name: NF9488_low_1
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_1 |
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| [»] scaffold0045 (2 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 15 - 478
Target Start/End: Original strand, 73812 - 74277
Alignment:
| Q |
15 |
ataaataccttccgaaaaatggaaacagttttgcaacaaaaattaacaattaaccattaccttatctgttgaaccaatttactacctcatcaaatctaac |
114 |
Q |
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| T |
73812 |
ataaataccttccgaaaaatggaaacagttttgcaacaaaaattaacaattaaccattaccttacctgttgaaccaatttactacctcatcaaatctaac |
73911 |
T |
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| Q |
115 |
atgacccatctcaattaatttatgactaannnnnnnnccaccaagttgattgttggtgttttaacgtattttggagggtttaaaagaacatttacaatat |
214 |
Q |
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| T |
73912 |
atgacccatctcaattaatttatcactaattttttt-ccac-aagtttattgttggtgttttaacgagttttggaaggtttgaaagaacatttacaatat |
74009 |
T |
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| Q |
215 |
tcaaattataaaaccgaaataaatttaaagaacgcacgaaaagagagtaaagtggtaaaagaaataaccttaannnnnnnct-----cctaaactctaca |
309 |
Q |
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| T |
74010 |
tcaaattataaaaccgaaataaatttaaaggacgcacgagaagagaataaggtggtaaa-gaaataaccttaattttttttttggatcctaaactctaca |
74108 |
T |
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| Q |
310 |
taacaactaaagtgggcttaaaaatcataaaactttaatagagcccaataattatcttatctcttaaacacacttaaaaaacggtttaatcttaattaca |
409 |
Q |
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| T |
74109 |
taacaactaaagtgggcttaaaaatcataaa-ctttaatagagcccaataattatcttatctcttaaacacacttaaaaaacggtttaatcttaatgaca |
74207 |
T |
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| Q |
410 |
attttc-ccaaaagaaagagacaactcacaaagcaaagcatcatagtcaacatcacatgttctaatctct |
478 |
Q |
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| T |
74208 |
attttctcaaaaagaaagagacaactcacaaagcaaagcatcatagtcaacatcacatgttctaatctct |
74277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 534 - 757
Target Start/End: Original strand, 74333 - 74556
Alignment:
| Q |
534 |
tgttatgggcacaaatccaacaccaccaccgcatcaaaaactaacccaccccaaaaacgacgtcgttttctcaccaatccttcaaccatacaatcaaacg |
633 |
Q |
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| T |
74333 |
tgttatgggcacaaatccaacaccaccaccgcatcaaaaactaacccaccccaaaaacgacgtcgttttctcaccaatccttcaaccatacaatcaaacg |
74432 |
T |
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| Q |
634 |
cgcgattctagacgccgcgcaaattcccctccgccgttcacattaaccaacatcctctccgccgcgatctcatggctccgaaaccgacggatccgtttca |
733 |
Q |
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| T |
74433 |
cgcgattctcgacgccgcgcaaattcccctccgccgttcacattaaccaccatcctctccgccgcgatctcatggctccgaaaccgacggatccgtttca |
74532 |
T |
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| Q |
734 |
tcttccttctcctctgtgctcctc |
757 |
Q |
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| T |
74533 |
tcttccttctcctctgttctcctc |
74556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 339 - 473
Target Start/End: Original strand, 229985 - 230119
Alignment:
| Q |
339 |
aaactttaatagagcccaataattatcttatctcttaaacacacttaaaaaacggtttaatcttaattacaattttccc-aaaagaaagagacaactcac |
437 |
Q |
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|||| |||||| |||||||| || |||||| |||||| ||||||| ||||||||||||||||||||| | ||||||||| |||||||||| ||||||||| |
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| T |
229985 |
aaaccttaataaagcccaatcatgatcttaactcttatacacactcaaaaaacggtttaatcttaatgaaaattttcccaaaaagaaagaaacaactcac |
230084 |
T |
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| Q |
438 |
aaagcaaagcatcatagtcaacatcacatgttctaa |
473 |
Q |
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| T |
230085 |
aaagcaaaccatcata-tcaacatcacatgttctaa |
230119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 574
Target Start/End: Original strand, 230165 - 230202
Alignment:
| Q |
537 |
tatgggcacaaatccaacaccaccaccgcatcaaaaac |
574 |
Q |
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| T |
230165 |
tatgggcacaaatccaacagcatcaccgcatcaaaaac |
230202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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