View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9488_low_17 (Length: 342)

Name: NF9488_low_17
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9488_low_17
NF9488_low_17
[»] chr1 (6 HSPs)
chr1 (1-335)||(7474990-7475324)
chr1 (62-335)||(6943898-6944180)
chr1 (138-332)||(7495341-7495535)
chr1 (246-331)||(7873385-7873470)
chr1 (4-120)||(7488075-7488191)
chr1 (243-285)||(13877809-13877851)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 7475324 - 7474990
Alignment:
Q  1 ccaacaactagagaggtccatcgtattccccctactagctgcctcgataccaaatcatctatgtatggttttggtgcagatgatccgaacatcattgatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7475324 ccaacaactagagaggtccatcgtattccccctactagctgcctcgataccaaatcatctatgtatggttttggtgcagatgatccaaacatcattgatt 7475225  T
Q  101 tcaaagttgtgaaactccatgtcaagtattacgagaagaaacattatatttcatgggcggaagtttatagtctaggtactaaatcatggactcctaccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7475224 tcaaagttgtgaaactccatgtcaagtattacgagaagaaacattatatttcatgggcggaagtttatagtctaggtactaaatcatggactcctaccct 7475125  T
Q  201 acatgctcctccttttactatcatcacaccaaaaattccctccaaatataacaatcttgttaacggcatttatcattggattacaaacaatgcattctac 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7475124 acatgctcctccttttactatcatcacacgaaaaattccctccaaatataacaatcttgttaacggcatttatcattggattacaaacaatgcattcttc 7475025  T
Q  301 tattgcaatgatgatgttgcaaatatcctatgctt 335  Q
    ||| |||||||||||||||||||||||||||||||    
T  7475024 tatcgcaatgatgatgttgcaaatatcctatgctt 7474990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 335
Target Start/End: Original strand, 6943898 - 6944180
Alignment:
Q  62 tgtatggttttggtgcagatgatccgaacatcattgatttcaaagttgtgaaactccatgtcaagtattac--gagaagaaaca----ttatatttcatg 155  Q
    |||||||||| ||||| |||||| | |||||||| |||||||||||||||||||||  | ||||  || |   ||||| | |||    || | ||||||     
T  6943898 tgtatggtttcggtgctgatgattccaacatcatcgatttcaaagttgtgaaactctgtatcaataatcattggagaaaacacaaactttctgtttcatc 6943997  T
Q  156 ggcggaagtttatagtctaggtactaaatcatggactcctaccctacatgctcctcct---tttactatcatcacaccaaaaattccctccaaatataac 252  Q
     ||||||||||||||||||   |||||||||||||| ||||||| |||| ||||||||   ||||||||||||||||   ||  ||||| ||||||||||    
T  6943998 agcggaagtttatagtctaatcactaaatcatggacccctacccgacatcctcctcctccttttactatcatcacacgtcaatgtcccttcaaatataac 6944097  T
Q  253 aatcttgttaacggcatttatcattggattacaaacaatgcattctactattgcaatgatgatgttgcaaatatcctatgctt 335  Q
    | ||||||||||||| ||||||||||||||||||| ||| |||||||| || || |||||| ||||||||||||| |||||||    
T  6944098 actcttgttaacggcgtttatcattggattacaaaaaattcattctaccatcgctatgatggtgttgcaaatatcttatgctt 6944180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 332
Target Start/End: Complemental strand, 7495535 - 7495341
Alignment:
Q  138 gaaacattatatttcatgggcggaagtttatagtctaggtactaaatcatggactcctaccctacatgctcctccttttactatcatcacaccaaaaatt 237  Q
    ||||||||||||||| |  ||||||||||||| |||| ||||||||| |||||| ||||| | |||| ||| |||||| ||||||||||| |   ||  |    
T  7495535 gaaacattatatttccttcgcggaagtttataatctaagtactaaattatggacccctactcaacatcctcatcctttaactatcatcacgcgtcaacgt 7495436  T
Q  238 ccctccaaatataacaatcttgttaacggcatttatcattggattacaaacaatgcattctactattgcaatgatgatgttgcaaatatcctatg 332  Q
    || || ||||| |||| ||||||||| ||  ||||||||||||||||| | ||| |||  ||||||  ||||||| ||| ||||||||| |||||    
T  7495435 ccttctaaatacaacactcttgttaatggtgtttatcattggattacagagaatacatattactatcccaatgattatgctgcaaatattctatg 7495341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 246 - 331
Target Start/End: Original strand, 7873385 - 7873470
Alignment:
Q  246 atataacaatcttgttaacggcatttatcattggattacaaacaatgcattctactattgcaatgatgatgttgcaaatatcctat 331  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||| || |||||||| ||||||||| | |||| ||||| ||||    
T  7873385 atataacactcttgttaacggcgtttatcattggattacagacaattcactctactatagcaatgatggttttgcgaatattctat 7873470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 7488191 - 7488075
Alignment:
Q  4 acaactagagaggtccatcgtattccccctactagctgcctcgataccaaatcatctatgtatggttttggtgcagatgatccgaacatcattgatttca 103  Q
    ||||||||||||||||| ||| |||| || | |  |||||| |||| | | ||||  ||||||||||| ||||| |||||||| |||| |||  | ||||    
T  7488191 acaactagagaggtccaccgtgttcctccgagtctctgccttgataacgactcatgcatgtatggtttcggtgccgatgatcccaacaacatcaacttca 7488092  T
Q  104 aagttgtgaaactccat 120  Q
    |||||||||||||||||    
T  7488091 aagttgtgaaactccat 7488075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 13877851 - 13877809
Alignment:
Q  243 caaatataacaatcttgttaacggcatttatcattggattaca 285  Q
    |||||| |||| ||||||||| |||||||||||||||||||||    
T  13877851 caaatacaacattcttgttaatggcatttatcattggattaca 13877809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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