View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_20 (Length: 310)
Name: NF9488_low_20
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 26655981 - 26655695
Alignment:
| Q |
1 |
atgaattaggatattgaaatgtttcgatgtctattgaagaatgtgaaattagaattacctctagatctccgaggagagcgaaagcgcagacgaagaaatc |
100 |
Q |
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| T |
26655981 |
atgaattaggatattgaaatgtttcgatgtctattgaagaatgtgaaattagaagtacctctagatctccgacgagagcgaaagcgcggacgaagaaatc |
26655882 |
T |
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| Q |
101 |
gagaacgagaagcttatcgtgaattgtttctgcggtgatggaatgaatgatagaaagtgattcggatttgaggagttgcgtcaaactggatcgaatttcg |
200 |
Q |
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| T |
26655881 |
gagaacgagaagcttatcgtgaattgtttctgcggtgatggaatgaatgatagatagtgattcggatttgaggagttgcgtcaaactggatcgaatttcg |
26655782 |
T |
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| Q |
201 |
actaatgatttcacgtctttggagatcaaaagcgaatctagaaatcggagcgtggaatcgccgaaactgcgatgaaatcaaaatgtt |
287 |
Q |
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| T |
26655781 |
actaacgatttcacgtctttggagatcaaaagcgaatctagaaatcggagcgtggaatcgccgaaactgcgatgaaatcaaaatgtt |
26655695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 56 - 287
Target Start/End: Complemental strand, 26642486 - 26642255
Alignment:
| Q |
56 |
tacctctagatctccgaggagagcgaaagcgcagacgaagaaatcgagaacgagaagcttatcgtgaattgtttctgcggtgatggaatgaatgatagaa |
155 |
Q |
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||||||||||||||| | | |||||||||||||||||||||||||||||||| ||||||| ||| | | |||||| |||||||| |||||||| ||| |
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| T |
26642486 |
tacctctagatctccaacaatagcgaaagcgcagacgaagaaatcgagaacgatgagcttattgtggacggattctgcagtgatggattgaatgatggaa |
26642387 |
T |
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| Q |
156 |
agtgattcggatttgaggagttgcgtcaaactggatcgaatttcgactaatgatttcacgtctttggagatcaaaagcgaatctagaaatcggagcgtgg |
255 |
Q |
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| T |
26642386 |
agagattcagatttgaggagttgattcaagctggatcgaatttcaactaacgatttcacgtctttggaaaccaagagcgaatctagaaatcggagcgtgg |
26642287 |
T |
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| Q |
256 |
aatcgccgaaactgcgatgaaatcaaaatgtt |
287 |
Q |
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| T |
26642286 |
aatcgccgaaactgcgatgaaatcaaaatgtt |
26642255 |
T |
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