View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9488_low_21 (Length: 297)

Name: NF9488_low_21
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9488_low_21
NF9488_low_21
[»] chr8 (28 HSPs)
chr8 (19-223)||(36783206-36783408)
chr8 (222-289)||(32393856-32393923)
chr8 (220-289)||(35353037-35353106)
chr8 (224-289)||(37986055-37986120)
chr8 (228-289)||(1645965-1646026)
chr8 (228-289)||(14128868-14128929)
chr8 (228-289)||(32064749-32064810)
chr8 (228-289)||(34665386-34665447)
chr8 (228-289)||(17841850-17841911)
chr8 (228-289)||(20091801-20091862)
chr8 (228-289)||(24211553-24211614)
chr8 (232-289)||(38016979-38017036)
chr8 (228-289)||(40780129-40780190)
chr8 (228-289)||(42755042-42755103)
chr8 (228-288)||(15187564-15187624)
chr8 (223-289)||(37132658-37132724)
chr8 (228-289)||(6108233-6108294)
chr8 (228-289)||(26042116-26042177)
chr8 (228-278)||(8453838-8453888)
chr8 (228-289)||(27782117-27782178)
chr8 (228-289)||(31347782-31347843)
chr8 (228-289)||(39772801-39772862)
chr8 (228-289)||(41819778-41819839)
chr8 (223-289)||(27835453-27835519)
chr8 (228-289)||(7017865-7017926)
chr8 (228-289)||(42754841-42754901)
chr8 (214-250)||(15972901-15972937)
chr8 (229-289)||(25581239-25581299)
[»] chr1 (16 HSPs)
chr1 (228-289)||(18404446-18404507)
chr1 (224-289)||(16045798-16045863)
chr1 (223-289)||(40214987-40215053)
chr1 (228-289)||(3559621-3559682)
chr1 (228-289)||(25463680-25463741)
chr1 (222-289)||(9910293-9910360)
chr1 (220-289)||(36966708-36966777)
chr1 (228-289)||(41876442-41876503)
chr1 (228-289)||(44094702-44094763)
chr1 (223-289)||(37821834-37821900)
chr1 (228-289)||(19015408-19015469)
chr1 (221-289)||(6883484-6883552)
chr1 (221-287)||(32000269-32000335)
chr1 (228-265)||(25973418-25973455)
chr1 (228-261)||(34519762-34519795)
chr1 (228-261)||(51620984-51621017)
[»] chr5 (18 HSPs)
chr5 (221-289)||(11361131-11361199)
chr5 (228-289)||(2477640-2477701)
chr5 (221-289)||(33584329-33584397)
chr5 (228-289)||(4892206-4892267)
chr5 (228-289)||(6043511-6043572)
chr5 (228-289)||(25398242-25398303)
chr5 (223-287)||(12850800-12850864)
chr5 (222-289)||(3522006-3522073)
chr5 (228-289)||(37321793-37321855)
chr5 (228-289)||(8145379-8145440)
chr5 (228-287)||(3362782-3362841)
chr5 (222-289)||(22913054-22913121)
chr5 (228-287)||(38899728-38899787)
chr5 (228-289)||(14138672-14138733)
chr5 (221-289)||(4434007-4434075)
chr5 (222-289)||(17545685-17545752)
chr5 (219-261)||(12614761-12614803)
chr5 (227-279)||(27481829-27481881)
[»] chr3 (23 HSPs)
chr3 (222-289)||(37217053-37217120)
chr3 (228-289)||(2754721-2754782)
chr3 (220-289)||(3456060-3456129)
chr3 (228-289)||(3574527-3574588)
chr3 (228-288)||(11347272-11347332)
chr3 (222-289)||(30385009-30385076)
chr3 (222-289)||(48160903-48160970)
chr3 (228-289)||(22426344-22426405)
chr3 (222-289)||(6041882-6041949)
chr3 (228-278)||(42297357-42297407)
chr3 (228-289)||(19650900-19650961)
chr3 (228-289)||(34482910-34482971)
chr3 (228-289)||(36865027-36865088)
chr3 (223-289)||(33145712-33145777)
chr3 (228-289)||(3137414-3137475)
chr3 (228-289)||(8320584-8320645)
chr3 (228-289)||(33113797-33113858)
chr3 (232-289)||(37522061-37522118)
chr3 (235-278)||(42921154-42921197)
chr3 (228-289)||(9797029-9797090)
chr3 (228-261)||(40327879-40327912)
chr3 (230-285)||(41224239-41224294)
chr3 (228-262)||(24343551-24343585)
[»] chr7 (17 HSPs)
chr7 (222-287)||(24394970-24395035)
chr7 (224-289)||(29737139-29737204)
chr7 (222-289)||(4974735-4974802)
chr7 (222-289)||(34482833-34482900)
chr7 (223-289)||(3961978-3962044)
chr7 (228-289)||(15577850-15577911)
chr7 (228-289)||(42611815-42611876)
chr7 (228-289)||(45637716-45637777)
chr7 (223-289)||(48880927-48880993)
chr7 (228-289)||(15329277-15329338)
chr7 (228-289)||(25167850-25167911)
chr7 (228-289)||(37477080-37477141)
chr7 (228-288)||(36790467-36790527)
chr7 (228-289)||(18036982-18037043)
chr7 (228-289)||(35444562-35444623)
chr7 (222-265)||(20010121-20010164)
chr7 (222-289)||(15238380-15238447)
[»] chr6 (15 HSPs)
chr6 (228-289)||(6127279-6127340)
chr6 (228-289)||(23291084-23291145)
chr6 (223-289)||(17705465-17705531)
chr6 (228-289)||(33695327-33695388)
chr6 (228-289)||(33696700-33696761)
chr6 (220-289)||(17176021-17176090)
chr6 (228-289)||(18365573-18365634)
chr6 (228-289)||(18370837-18370898)
chr6 (228-278)||(28675152-28675202)
chr6 (228-289)||(6031741-6031802)
chr6 (228-289)||(8515725-8515786)
chr6 (228-289)||(25986934-25986995)
chr6 (228-288)||(18889698-18889757)
chr6 (224-289)||(11548588-11548653)
chr6 (228-288)||(29693652-29693712)
[»] chr4 (25 HSPs)
chr4 (228-289)||(7745112-7745173)
chr4 (220-289)||(22199257-22199326)
chr4 (222-289)||(49387888-49387955)
chr4 (220-289)||(2624833-2624902)
chr4 (228-289)||(10442789-10442850)
chr4 (228-289)||(31078819-31078880)
chr4 (228-287)||(36072951-36073010)
chr4 (228-289)||(21802322-21802383)
chr4 (228-289)||(23964465-23964526)
chr4 (228-289)||(24128243-24128304)
chr4 (228-289)||(33530688-33530749)
chr4 (228-289)||(36073354-36073415)
chr4 (228-289)||(47290070-47290131)
chr4 (228-289)||(50156578-50156639)
chr4 (228-287)||(4751450-4751509)
chr4 (228-289)||(24392671-24392732)
chr4 (228-289)||(44893430-44893491)
chr4 (221-289)||(46441841-46441909)
chr4 (230-289)||(42671675-42671734)
chr4 (228-286)||(37934944-37935002)
chr4 (228-289)||(53123034-53123096)
chr4 (228-289)||(25063373-25063434)
chr4 (241-289)||(44744452-44744500)
chr4 (228-289)||(44893213-44893275)
chr4 (236-289)||(37219837-37219890)
[»] chr2 (14 HSPs)
chr2 (228-289)||(10661891-10661952)
chr2 (228-289)||(35160761-35160822)
chr2 (221-289)||(21936078-21936146)
chr2 (228-289)||(7475508-7475569)
chr2 (228-289)||(9293576-9293637)
chr2 (228-289)||(21393688-21393749)
chr2 (228-289)||(23268062-23268123)
chr2 (228-289)||(33380211-33380272)
chr2 (228-289)||(31174834-31174895)
chr2 (228-288)||(13354850-13354910)
chr2 (228-289)||(14941366-14941427)
chr2 (228-289)||(43330916-43330977)
chr2 (228-289)||(9723409-9723470)
chr2 (228-261)||(40262714-40262747)
[»] scaffold0665 (1 HSPs)
scaffold0665 (228-289)||(3072-3133)
[»] scaffold0204 (1 HSPs)
scaffold0204 (228-289)||(4400-4461)
[»] scaffold0178 (1 HSPs)
scaffold0178 (223-289)||(11620-11686)
[»] scaffold0471 (1 HSPs)
scaffold0471 (228-289)||(12846-12907)
[»] scaffold0096 (1 HSPs)
scaffold0096 (228-289)||(41015-41076)
[»] scaffold0085 (1 HSPs)
scaffold0085 (228-289)||(47854-47915)
[»] scaffold0228 (3 HSPs)
scaffold0228 (235-289)||(8413-8467)
scaffold0228 (235-289)||(15995-16049)
scaffold0228 (235-289)||(25947-26001)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 36783206 - 36783408
Alignment:
Q  19 gagatttggatccaaaaaatatcttttaaaattaatatgagcaacatatttagctcataaatattattctattaattgcatattgattttgttttgagaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36783206 gagatttggatccaaaaaatatcttttaaaattaatatgagcaacatatttagctcataaatattattctattaattgcatattgattttgttttgagaa 36783305  T
Q  119 aagttaatatgcttgattgatgaacgtatatacaagtagaaaatattttcagaaaataaaaagtagaataatcaataaaattaaaccaaatcttcttttt 218  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  36783306 aagtta--atgcttgattgatgaacgtatatacaagtagaaaatattttcagaaaataaaaagtagaagaatcgataaaattaaaccaaatcttcttttt 36783403  T
Q  219 catat 223  Q
    |||||    
T  36783404 catat 36783408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 32393856 - 32393923
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  32393856 atgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 32393923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 35353037 - 35353106
Alignment:
Q  220 atatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||||    
T  35353037 atatgagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 35353106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 37986120 - 37986055
Alignment:
Q  224 gagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||    
T  37986120 gagtaatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 37986055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 1646026 - 1645965
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | || ||||||| |||||||||    
T  1646026 aatgctatatatcaagaaagattttatcaagaaaattttaagaaagacatggcagaataatc 1645965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 14128868 - 14128929
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||    
T  14128868 aatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatc 14128929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 32064749 - 32064810
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  32064749 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 32064810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 34665386 - 34665447
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  34665386 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 34665447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 17841911 - 17841850
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | |||||||||| |||||||||    
T  17841911 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 17841850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 20091862 - 20091801
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||| ||||||||||||||||||  | |||||||||| |||||||||    
T  20091862 aatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 20091801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 24211614 - 24211553
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||| ||||| |||||||||    
T  24211614 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatggcatggcagaataatc 24211553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 38016979 - 38017036
Alignment:
Q  232 ctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  38016979 ctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 38017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 40780190 - 40780129
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | |||||||||| |||||||||    
T  40780190 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 40780129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 42755103 - 42755042
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| |||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  42755103 aatgatatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 42755042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 15187564 - 15187624
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataat 288  Q
    ||||||||||||||||||||||||||||||||||||||  | ||||| |||| ||||||||    
T  15187564 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataat 15187624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 37132724 - 37132658
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||| ||| ||||||||||||||| ||| | |||||||||| |||||||||    
T  37132724 tgagcaatgctatatatcaaaaaatattttatcaagaaaaatttaagaatgacatggcagaataatc 37132658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 6108294 - 6108233
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| |||||||||||||||||||| | ||||||||||| | |||||||||| |||||||||    
T  6108294 aatgttatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaataatc 6108233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 26042177 - 26042116
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||| |||||||||||||||||||||||||  | |||||||||  |||||||||    
T  26042177 aatgctatatattaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 26042116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 8453838 - 8453888
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatg 278  Q
    ||||||||||||||||||||||||| ||||||||||||  | |||||||||    
T  8453838 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatg 8453888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 27782178 - 27782117
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||| ||||||||||||||  ||  | |||||||||| |||||||||    
T  27782178 aatgctatatatcaagaaatattttatcaagaaagattcaataatgacatggcagaataatc 27782117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 31347843 - 31347782
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||| ||||| ||||||||| ||  | |||||||||| |||||||||    
T  31347843 aatgctatatatcaagaaatattttctcaagaaaaattcaagaatgacatggcagaataatc 31347782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 39772862 - 39772801
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| |||||||||||||| |||||||||| |||||||  | |||||||||| |||||||||    
T  39772862 aatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgacatggcagaataatc 39772801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 41819839 - 41819778
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||||||||||||||||  |||| | ||||| |||| |||||||||    
T  41819839 aatgttatatatcaagaaagattttatcaagaatgttttaagaatgatatggcagaataatc 41819778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 27835519 - 27835453
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||| |||||| |||| ||||||| ||  | |||||||||||| |||||||    
T  27835519 tgagcaatgctatatatcaataaagatcttattaagaaaaattcaagaatgacatggtaaaataatc 27835453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 7017926 - 7017865
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||| |||||||||| | ||||||| ||  | |||||||||| |||||||||    
T  7017926 aatgctatatatcatgaaagattttcttaagaaaaattcaagaatgacatggcagaataatc 7017865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 42754841 - 42754901
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||| |||||||||| |||||||| ||||||| ||| | |||||||||||| |||||||    
T  42754841 aatgctagatatcaagaatgattttat-aagaaaaatttaagaatgacatggtacaataatc 42754901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 15972937 - 15972901
Alignment:
Q  214 tttttcatatgagtaatgctatatatcaagaaagatt 250  Q
    |||| |||||||| |||||||||||||||||||||||    
T  15972937 ttttccatatgagcaatgctatatatcaagaaagatt 15972901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 25581299 - 25581239
Alignment:
Q  229 atgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||| |||||  ||||||||||  | |||||||||| | |||||||    
T  25581299 atgctatatatcaagaaagtttttacgaagaaaatttcaagaatgacatggcaaaataatc 25581239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 18404446 - 18404507
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  18404446 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggtagaataatc 18404507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 16045863 - 16045798
Alignment:
Q  224 gagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  16045863 gagtaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 16045798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 40214987 - 40215053
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  40214987 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 40215053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 3559621 - 3559682
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||    
T  3559621 aatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 3559682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 25463680 - 25463741
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||    
T  25463680 aatgctatatatcaagaaagattttatgaagaaaattttaagaatgacatggcagaataatc 25463741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 9910360 - 9910293
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||  | |||||||||| |||||||||    
T  9910360 atgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 9910293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 36966777 - 36966708
Alignment:
Q  220 atatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||  | ||||| |||| |||||||||    
T  36966777 atatgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 36966708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 41876503 - 41876442
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| |||| |||||||| | |||||||||| |||||||||    
T  41876503 aatgctatatatcaagaaagattttttcaaaaaaattttaagaatgacatggcagaataatc 41876442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 44094702 - 44094763
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||| ||||||||||||||||||  | |||||||||| |||||||||    
T  44094702 aatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 44094763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 37821900 - 37821834
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||||||||||||| ||||||||||||  | ||||| |||| |||||||||    
T  37821900 tgagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 37821834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 19015408 - 19015469
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | ||||| |||| |||||||||    
T  19015408 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 19015469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 6883484 - 6883552
Alignment:
Q  221 tatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||| |||||||||||| |||||||||||| | ||||||||||  | |||||||||| |||||||||    
T  6883484 tatgagcaatgctatatattaagaaagatttttttaagaaaatttcaagaatgacatggcagaataatc 6883552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 32000335 - 32000269
Alignment:
Q  221 tatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataa 287  Q
    |||||| ||||||||||||||||||||||||| ||||||||| ||  | |||||||||  |||||||    
T  32000335 tatgagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatgacagaataa 32000269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 25973418 - 25973455
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaattt 265  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  25973418 aatgttatatatcaagaaagattttatcatgaaaattt 25973455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 34519762 - 34519795
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaa 261  Q
    ||||||||||||||||||||||||||| ||||||    
T  34519762 aatgctatatatcaagaaagattttattaagaaa 34519795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 51620984 - 51621017
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaa 261  Q
    ||||||||||||||||||||||||||| ||||||    
T  51620984 aatgctatatatcaagaaagattttattaagaaa 51621017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 11361199 - 11361131
Alignment:
Q  221 tatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  11361199 tatgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 11361131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 2477640 - 2477701
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  2477640 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 2477701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 33584397 - 33584329
Alignment:
Q  221 tatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||||    
T  33584397 tatgagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 33584329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 4892206 - 4892267
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||||    
T  4892206 aatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 4892267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 6043572 - 6043511
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  6043572 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggaagaataatc 6043511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 25398242 - 25398303
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||||    
T  25398242 aatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 25398303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 12850800 - 12850864
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataa 287  Q
    |||| |||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||    
T  12850800 tgagcaatgctatatatcaagaaagattttatcaagaaaattccaaaaatgacatggcagaataa 12850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 3522073 - 3522006
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||  |||||||||||| |||||||||    
T  3522073 atgagcaatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgacatggcagaataatc 3522006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 37321855 - 37321793
Alignment:
Q  228 aatgctatatatc-aagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||||||| |||||||||    
T  37321855 aatgctatatatctaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 37321793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 8145379 - 8145440
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| |||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  8145379 aatgttatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 8145440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 3362782 - 3362841
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataa 287  Q
    |||||||||||||||||||||||||||||||||||||   | |||||||||| |||||||    
T  3362782 aatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 3362841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 22913121 - 22913054
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||||||||| ||||||||| ||  | |||||||||| |||||||||    
T  22913121 atgagcaatgctatatatcaagaaagattttttcaagaaaaattcaagaatgacatggcagaataatc 22913054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 287
Target Start/End: Complemental strand, 38899787 - 38899728
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataa 287  Q
    |||||||||||||||||||||||||||||||||||||   | |||||||||| |||||||    
T  38899787 aatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 38899728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 14138672 - 14138733
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| |||||||||||||||||||||||||||||||||  | ||| |||||| |||||||||    
T  14138672 aatgttatatatcaagaaagattttatcaagaaaatttcaagaattacatggcagaataatc 14138733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 289
Target Start/End: Complemental strand, 4434075 - 4434007
Alignment:
Q  221 tatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||| ||||||||||||||||||||||||| | ||||||||||  | ||||| |||| |||||||||    
T  4434075 tatgagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgatatggcagaataatc 4434007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 17545752 - 17545685
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||| | ||| ||||||||| ||  | |||||||||| |||||||||    
T  17545752 atgagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacatggcagaataatc 17545685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 261
Target Start/End: Complemental strand, 12614803 - 12614761
Alignment:
Q  219 catatgagtaatgctatatatcaagaaagattttatcaagaaa 261  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||    
T  12614803 catacgagcaatgctatatatcaagaaatattttatcaagaaa 12614761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 27481829 - 27481881
Alignment:
Q  227 taatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatgg 279  Q
    ||||||||| ||| |||||||||||||||||||||| ||  | ||||||||||    
T  27481829 taatgctatgtattaagaaagattttatcaagaaaaattcaagaatgacatgg 27481881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 37217120 - 37217053
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  37217120 atgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 37217053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 2754721 - 2754782
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  2754721 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 2754782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 3456060 - 3456129
Alignment:
Q  220 atatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||    
T  3456060 atatgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatc 3456129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 3574588 - 3574527
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  3574588 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 3574527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 11347272 - 11347332
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataat 288  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||    
T  11347272 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataat 11347332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 30385009 - 30385076
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| |||||||| |||||||||||||||||||||||||||||  |||||||||||| |||||||||    
T  30385009 atgagcaatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgacatggcagaataatc 30385076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 48160903 - 48160970
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||    
T  48160903 atgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatc 48160970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 22426405 - 22426344
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||    
T  22426405 aatgttatatattaagaaagattttatcaagaaaattttaaaaatgacatggcagaataatc 22426344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 6041882 - 6041949
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||  |||||||||    
T  6041882 atgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 6041949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 42297357 - 42297407
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatg 278  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  42297357 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatg 42297407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 19650961 - 19650900
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||| |||||||||||||||||||||||||| | |||||||||| |||||||||    
T  19650961 aatgttatatattaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 19650900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 34482971 - 34482910
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | ||||| ||||||||||||||    
T  34482971 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggtagaataatc 34482910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 36865088 - 36865027
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||| ||| |||||||||| ||||||||||| | ||||||||||||||||||||    
T  36865088 aatgctatatattaaggaagattttattaagaaaattttaagaatgacatggtagaataatc 36865027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 33145712 - 33145777
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||||||||||||||| || |||||||| | |||||||||| |||||||||    
T  33145712 tgagcaatgctatatatcaagaaagattttattaa-aaaattttaagaatgacatggcagaataatc 33145777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 3137475 - 3137414
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | |||||||||| | |||||||    
T  3137475 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcaaaataatc 3137414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 8320645 - 8320584
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| |||||||||||||||||||||||||||||||||| | ||||| |||| | |||||||    
T  8320645 aatgttatatatcaagaaagattttatcaagaaaattttaagaatgatatggcaaaataatc 8320584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 33113797 - 33113858
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||| ||||||||||  | ||| |||||| |||||||||    
T  33113797 aatgctatatatcaagaaagattttattaagaaaatttcaagaattacatggcagaataatc 33113858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 289
Target Start/End: Original strand, 37522061 - 37522118
Alignment:
Q  232 ctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||  |||||||||    
T  37522061 ctatatatcaagaaagattttttcaagaaaattttaagaatgacatgacagaataatc 37522118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 42921154 - 42921197
Alignment:
Q  235 tatatcaagaaagattttatcaagaaaatttttaaaatgacatg 278  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  42921154 tatatcaagaaagattttatcaagaaaattttaagaatgacatg 42921197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 9797090 - 9797029
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| |||||||||||||||||||| ||||||||| ||  | |||||||||| |||||||||    
T  9797090 aatgttatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaataatc 9797029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 40327879 - 40327912
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaa 261  Q
    ||||||||||||||||||||||||||||||||||    
T  40327879 aatgctatatatcaagaaagattttatcaagaaa 40327912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 285
Target Start/End: Original strand, 41224239 - 41224294
Alignment:
Q  230 tgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaat 285  Q
    |||||||||| |||||||||||| ||||||||| ||  | ||||||||||||||||    
T  41224239 tgctatatattaagaaagattttctcaagaaaaattcaagaatgacatggtagaat 41224294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 24343551 - 24343585
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaa 262  Q
    |||||||||||| ||||||||||||||||||||||    
T  24343551 aatgctatatattaagaaagattttatcaagaaaa 24343585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 24394970 - 24395035
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataa 287  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||    
T  24394970 atgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataa 24395035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 224 - 289
Target Start/End: Original strand, 29737139 - 29737204
Alignment:
Q  224 gagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||| | ||||||||||| | ||||||||||||||||||||    
T  29737139 gagtaatgctatatatcaagaaagatttttttaagaaaattttaagaatgacatggtagaataatc 29737204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 4974802 - 4974735
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  4974802 atgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 4974735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 34482833 - 34482900
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||| | |||||||||| |||||||||    
T  34482833 atgagcaatgctatatatcaagaaagattttattaagaaaattttaagaatgacatggcagaataatc 34482900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 3961978 - 3962044
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||||||    
T  3961978 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 3962044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 15577911 - 15577850
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  15577911 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 15577850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 42611815 - 42611876
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  42611815 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 42611876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 45637716 - 45637777
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  45637716 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 45637777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 48880993 - 48880927
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||||||||||||||||||||||||||  | |||||||||  |||||||||    
T  48880993 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 48880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 15329277 - 15329338
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||  |||||||||    
T  15329277 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 15329338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 25167911 - 25167850
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| | ||||||||||| | |||||||||| |||||||||    
T  25167911 aatgctatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaataatc 25167850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 37477141 - 37477080
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||| ||| | |||||||||| |||||||||    
T  37477141 aatgctatatatcaagaaagattttctcaagaaaaatttaagaatgacatggcagaataatc 37477080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 36790527 - 36790467
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataat 288  Q
    |||||||||||||||||||| |||||||||||||| ||| | |||||||||| ||||||||    
T  36790527 aatgctatatatcaagaaagtttttatcaagaaaaatttaagaatgacatggcagaataat 36790467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 18036982 - 18037043
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| |||||||||||||||||||| ||||||||| ||| | |||||||||| |||||||||    
T  18036982 aatgatatatatcaagaaagattttttcaagaaaaatttaagaatgacatggcagaataatc 18037043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 35444562 - 35444623
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||| |||||||||||| ||||||||||||  | |||||||||| |||||||||    
T  35444562 aatgctatatattaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 35444623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 265
Target Start/End: Complemental strand, 20010164 - 20010121
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaattt 265  Q
    ||||| |||||||||||||||||||||||||||||| |||||||    
T  20010164 atgagcaatgctatatatcaagaaagattttatcaaaaaaattt 20010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 289
Target Start/End: Original strand, 15238380 - 15238447
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||| | ||| ||||||||| ||  | |||||||||| |||||||||    
T  15238380 atgagcaatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacatggcagaataatc 15238447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 6127279 - 6127340
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  6127279 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 6127340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 23291145 - 23291084
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  23291145 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 23291084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 17705531 - 17705465
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||||||||||||||||||||||||||| | |||||||||  |||||||||    
T  17705531 tgagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 17705465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 33695388 - 33695327
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  33695388 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 33695327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 33696700 - 33696761
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  33696700 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 33696761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 17176090 - 17176021
Alignment:
Q  220 atatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  | |||||||||  |||||||||    
T  17176090 atatgagcaatgctatatatcaagaaagattttatcaataaaatttcaagaatgacatgacagaataatc 17176021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 18365634 - 18365573
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||| |||||||  | |||||||||| |||||||||    
T  18365634 aatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 18365573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 18370898 - 18370837
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||| |||||||  | |||||||||| |||||||||    
T  18370898 aatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 18370837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 28675152 - 28675202
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatg 278  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  28675152 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatg 28675202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 6031802 - 6031741
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||| ||||| |||||||| | |||||||||  |||||||||    
T  6031802 aatgctatatatcaagaaagatttcatcaataaaattttaagaatgacatgacagaataatc 6031741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 8515786 - 8515725
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||||| |  ||| | |||||||||| |||||||||    
T  8515786 aatgctatatatcaagaaagattttatcaagacagatttaagaatgacatggcagaataatc 8515725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 25986934 - 25986995
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||| ||||||||||  | |||||||||| | |||||||    
T  25986934 aatgctatatatcaagaaagattttattaagaaaatttcaagaatgacatggcaaaataatc 25986995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 18889757 - 18889698
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataat 288  Q
    ||||||||||||||||||||| ||||||||||||||||  | |||||||||| ||||||||    
T  18889757 aatgctatatatcaagaaaga-tttatcaagaaaatttcaagaatgacatggcagaataat 18889698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 11548653 - 11548588
Alignment:
Q  224 gagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||| ||||| ||||||||| ||  | |||||||||| |||||||||    
T  11548653 gagtattgctatatatcaagaaaaattttctcaagaaaaattcaagaatgacatggcagaataatc 11548588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 29693712 - 29693652
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataat 288  Q
    ||||||| |||||||||| |||||||||||||||  ||| | |||||||||| ||||||||    
T  29693712 aatgctagatatcaagaatgattttatcaagaaagatttaagaatgacatggcagaataat 29693652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 7745173 - 7745112
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  7745173 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 7745112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 22199257 - 22199326
Alignment:
Q  220 atatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  22199257 atatgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 22199326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 289
Target Start/End: Complemental strand, 49387955 - 49387888
Alignment:
Q  222 atgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  49387955 atgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 49387888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 2624833 - 2624902
Alignment:
Q  220 atatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||  | ||||| |||| |||||||||    
T  2624833 atatgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaaatggcagaataatc 2624902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 10442850 - 10442789
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  10442850 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 10442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 31078880 - 31078819
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  31078880 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 31078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 36072951 - 36073010
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataa 287  Q
    ||||||||||||||||||||||||||||||||||||||  | |||||||||| |||||||    
T  36072951 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataa 36073010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 21802383 - 21802322
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||| ||||||||||||||||||  | |||||||||| |||||||||    
T  21802383 aatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 21802322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 23964526 - 23964465
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||    
T  23964526 aatgttatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 23964465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 24128243 - 24128304
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | |||||||||| |||||||||    
T  24128243 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 24128304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 33530749 - 33530688
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||| ||  | |||||||||| |||||||||    
T  33530749 aatgctatatatcaagaaagattttatcaagaaaaattcaagaatgacatggcagaataatc 33530688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 36073354 - 36073415
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | |||||||||| |||||||||    
T  36073354 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 36073415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 47290070 - 47290131
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | |||||||||| |||||||||    
T  47290070 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 47290131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 50156639 - 50156578
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||| |||||||||||| ||||||||||||| | |||||||||| |||||||||    
T  50156639 aatgctatatattaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 50156578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 4751450 - 4751509
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataa 287  Q
    |||||||||||||||||||||||||||||||||||||   | |||||||||| |||||||    
T  4751450 aatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 4751509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 24392671 - 24392732
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||| ||  | |||||||||| |||||||||    
T  24392671 aatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaataatc 24392732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 44893430 - 44893491
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| |||| |||||||  | |||||||||| |||||||||    
T  44893430 aatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgacatggcagaataatc 44893491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 46441841 - 46441909
Alignment:
Q  221 tatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||| ||||||||||||||||||||||||| | ||||||||||  | |||||||||| | |||||||    
T  46441841 tatgagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgacatggcaaaataatc 46441909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 42671675 - 42671734
Alignment:
Q  230 tgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||| |||||||||||||| |||| ||| | |||||||||| |||||||||    
T  42671675 tgctatatatcaataaagattttatcaaaaaaaatttaagaatgacatggcagaataatc 42671734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 37935002 - 37934944
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaata 286  Q
    ||||||||||||||| |||||||||||||| ||||| |  | |||||||||||||||||    
T  37935002 aatgctatatatcaaaaaagattttatcaaaaaaatgtcaagaatgacatggtagaata 37934944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 53123034 - 53123096
Alignment:
Q  228 aatgctatatatcaagaaagattttatc-aagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| || ||||||||||  | |||||||||| |||||||||    
T  53123034 aatgctatatatcaagaaagattttttcaaagaaaatttcaagaatgacatggcagaataatc 53123096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 25063373 - 25063434
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||| |||||||||| |||||||||||||||  ||  | ||||||||||||||||||||    
T  25063373 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgacatggtagaataatc 25063434  T

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Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 289
Target Start/End: Original strand, 44744452 - 44744500
Alignment:
Q  241 aagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||| ||||||  ||| ||||||||||||||||||||||    
T  44744452 aagaaagattttattaagaaatatttaaaaatgacatggtagaataatc 44744500  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 44893275 - 44893213
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaa-aatgacatggtagaataatc 289  Q
    |||||||||||| |||||||||||| |||| |||| ||| || |||||||||| |||||||||    
T  44893275 aatgctatatattaagaaagattttttcaaaaaaaatttcaagaatgacatggcagaataatc 44893213  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Complemental strand, 37219890 - 37219837
Alignment:
Q  236 atatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||| |||||||||||||||  ||| | |||||||||| |||||||||    
T  37219890 atatcaagaatgattttatcaagaaagatttaagaatgacatggcagaataatc 37219837  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 10661891 - 10661952
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  10661891 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 10661952  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 35160761 - 35160822
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||    
T  35160761 aatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 35160822  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 21936078 - 21936146
Alignment:
Q  221 tatgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  | ||||| |||| |||||||||    
T  21936078 tatgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataatc 21936146  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 7475569 - 7475508
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | ||||||||| ||||||||||    
T  7475569 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatgatagaataatc 7475508  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 9293637 - 9293576
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||||||| |||  | |||||||||| |||||||||    
T  9293637 aatgctatatatcaagaaagattttatcaagaaattttcaagaatgacatggcagaataatc 9293576  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 21393749 - 21393688
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||| ||||| ||||||||| ||| | ||||||||||||||||||||    
T  21393749 aatgctatatatcaagaaaaattttctcaagaaaaatttaagaatgacatggtagaataatc 21393688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 23268123 - 23268062
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | |||||||||| |||||||||    
T  23268123 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 23268062  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 33380211 - 33380272
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||  ||||||||    
T  33380211 aatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggctgaataatc 33380272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 31174895 - 31174834
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| |||||||||||||||||||||| ||||||||||  | |||||||||| |||||||||    
T  31174895 aatgttatatatcaagaaagattttattaagaaaatttcaagaatgacatggcagaataatc 31174834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 13354850 - 13354910
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataat 288  Q
    |||| |||||||||||||||||||||||||||||||||  | ||||| |||| ||||||||    
T  13354850 aatgttatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataat 13354910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 289
Target Start/End: Complemental strand, 14941427 - 14941366
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||||| ||||||  ||  | |||||||||| |||||||||    
T  14941427 aatgctatatatcaagaaagattttattaagaaagattcaagaatgacatggcagaataatc 14941366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 43330916 - 43330977
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| |||| |||| ||  | |||||||||| |||||||||    
T  43330916 aatgctatatatcaagaaagattttctcaaaaaaaattcaagaatgacatggcagaataatc 43330977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 9723409 - 9723470
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||| |||||||||||||| ||||||  ||| | |||||||||  |||||||||    
T  9723409 aatgctatatattaagaaagattttattaagaaagatttaagaatgacatgacagaataatc 9723470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Complemental strand, 40262747 - 40262714
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaa 261  Q
    |||| |||||||||||||||||||||||||||||    
T  40262747 aatgttatatatcaagaaagattttatcaagaaa 40262714  T

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Target: scaffold0665 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 3072 - 3133
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||| |||||||| | |||||||||| |||||||||    
T  3072 aatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatc 3133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 4400 - 4461
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||||    
T  4400 aatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 4461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 11620 - 11686
Alignment:
Q  223 tgagtaatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||| ||||||||||||||||||||||||||||||||||||||  | |||||||||  |||||||||    
T  11620 tgagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 11686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 12846 - 12907
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    ||||||||||||||||||||||||| ||||||||||||  | |||||||||| |||||||||    
T  12846 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 12907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 41015 - 41076
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||| |||||||  | |||||||||| |||||||||    
T  41015 aatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 41076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 228 - 289
Target Start/End: Original strand, 47854 - 47915
Alignment:
Q  228 aatgctatatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||| |||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  47854 aatgctatttatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 47915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 8413 - 8467
Alignment:
Q  235 tatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 8467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 15995 - 16049
Alignment:
Q  235 tatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 16049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 25947 - 26001
Alignment:
Q  235 tatatcaagaaagattttatcaagaaaatttttaaaatgacatggtagaataatc 289  Q
    |||||||||||||||||||||||||||||||  | |||||||||| |||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 26001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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