View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_23 (Length: 295)
Name: NF9488_low_23
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 39582018 - 39581753
Alignment:
| Q |
17 |
aatgataagctaattaattagttgatgttagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatat |
116 |
Q |
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| T |
39582018 |
aatgataagctaattaattagttgatgttagtgcatatatacatcacataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatat |
39581919 |
T |
|
| Q |
117 |
atcacaatcttctgcgcagcaccaagcacgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctcttattttgcgtctccatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581918 |
atcacaatcttctgcgcagcaccaagcacgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctcttattttgcgtctccatc |
39581819 |
T |
|
| Q |
217 |
tcagcaactgaagctacttttattttaatctccacttccacttctggtgttgtgaacataccctct |
282 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39581818 |
tcagaaactgaagctacttttattttaatctccacttccacttctggtgttgtgaacataccctct |
39581753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 31 - 282
Target Start/End: Original strand, 39565811 - 39566059
Alignment:
| Q |
31 |
taattagttgatgttagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctg |
130 |
Q |
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|||||||||||||||||||| ||||||| | ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
39565811 |
taattagttgatgttagtgcctatatacgtagcataatcttgcatcaaaactaaaaagcctccaaagcg---ccaaacgcaaatatatcacactcttctg |
39565907 |
T |
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| Q |
131 |
cgcagcaccaagcacgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctcttattttgcgtctccatctcagcaactgaagc |
230 |
Q |
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| T |
39565908 |
cgcagcaccaagcacgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctgttattttgcttctccatctcagcaaccgaggc |
39566007 |
T |
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| Q |
231 |
tacttttattttaatctccacttccacttctggtgttgtgaacataccctct |
282 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
39566008 |
tacttttattttaatctccacttccacttctggcgttatgaacataccctct |
39566059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 31 - 282
Target Start/End: Original strand, 39571286 - 39571537
Alignment:
| Q |
31 |
taattagttgatgttagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctg |
130 |
Q |
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|||||||||||| | | |||||||||||| |||| |||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| | |
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| T |
39571286 |
taattagttgatatcggggcatatatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcaccgaatgcaaatatatcacattcttcag |
39571385 |
T |
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| Q |
131 |
cgcagcaccaagcacgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctcttattttgcgtctccatctcagcaactgaagc |
230 |
Q |
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| | ||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
39571386 |
cactgcaccaagcttgatgatcatgaccatttttgcatccacactcattccaattattcaatctcctcttattttgcttctccatctcaacaactgaagc |
39571485 |
T |
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| Q |
231 |
tacttttattttaatctccacttccacttctggtgttgtgaacataccctct |
282 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39571486 |
tactcttattttaatctccacttccacttctggtgtactgaacataccctct |
39571537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 31 - 282
Target Start/End: Complemental strand, 39585643 - 39585392
Alignment:
| Q |
31 |
taattagttgatgttagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctg |
130 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||||||||| | |
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| T |
39585643 |
taattagttgatgttagtgcatatatacatcacataattttgcatccaaatcaaaaagcctccaaagctccacctaatgcaaatatatcacaatcttcag |
39585544 |
T |
|
| Q |
131 |
cgcagcaccaagcacgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctcttattttgcgtctccatctcagcaactgaagc |
230 |
Q |
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| |||||| || |||| | ||| || ||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||| |
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| T |
39585543 |
tgttgcaccatgcttgatgattatgaccatttttgcatccacactcattccagttattcaatctccatttatttttgttctccatctcagcaaccgaagg |
39585444 |
T |
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| Q |
231 |
tacttttattttaatctccacttccacttctggtgttgtgaacataccctct |
282 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39585443 |
aacttttattttaatctccacttccacttctgttgttgtgaacataccctct |
39585392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 39 - 282
Target Start/End: Original strand, 39568477 - 39568720
Alignment:
| Q |
39 |
tgatgttagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcac |
138 |
Q |
| |
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|||||||||| ||||||| ||||| ||| | |||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||| |||| |||| |
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| T |
39568477 |
tgatgttagtacatatatgcatcacatagtcttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataaatcacaatcttcggcgctgcac |
39568576 |
T |
|
| Q |
139 |
caagcacgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctcttattttgcgtctccatctcagcaactgaagctactttta |
238 |
Q |
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|||||| ||| ||||| || |||||||||||||||||||||||||||||||| || |||||||| | | | |||||||||||||| ||||| ||| ||| |
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| T |
39568577 |
caagcattatgatcatgaccatttttgcatccacactcattccaattattcaaccttctcttattcttcttttccatctcagcaaccgaagccactctta |
39568676 |
T |
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| Q |
239 |
ttttaatctccacttccacttctggtgttgtgaacataccctct |
282 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||||| ||||| |
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| T |
39568677 |
ttttaatttccacttccacttctggtgttgggaacatagcctct |
39568720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 39575429 - 39575192
Alignment:
| Q |
45 |
tagtgcatatatacatcagataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcaccaagca |
144 |
Q |
| |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||| | | ||||||||| |
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| T |
39575429 |
tagtgcatatatacatcacatatttttgcatcaaaatcaaaaagcctccaaagctccacctaatgcaaatatatcacaatcttcagtgttgcaccaagct |
39575330 |
T |
|
| Q |
145 |
cgatggtcatggccgtttttgcatccacactcattccaattattcaatctcctcttattttgcgtctccatctcagcaactgaagctacttttattttaa |
244 |
Q |
| |
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||||| ||||| || ||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
39575329 |
cgatgatcatgaccatttttacatccacacttgttccaattattcaatctcctcttattttgcttctccatctccgcaaccgaagctacttttattttaa |
39575230 |
T |
|
| Q |
245 |
tctccacttccacttctggtgttgtgaacataccctct |
282 |
Q |
| |
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||||||||||||| | || ||| |||| ||||||||| |
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| T |
39575229 |
tctccacttccacctacggcgttatgaatataccctct |
39575192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 70 - 282
Target Start/End: Original strand, 39561138 - 39561350
Alignment:
| Q |
70 |
ttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcaccaagcacgatggtcatggccgtttttgcatc |
169 |
Q |
| |
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|||||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||| |||| ||||||||| |||| |||||||| || ||||||| |
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| T |
39561138 |
ttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaagcgtgatgatcatggccattcttgcatc |
39561237 |
T |
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| Q |
170 |
cacactcattccaattattcaatctcctcttattttgcgtctccatctcagcaactgaagctacttttattttaatctccacttccacttctggtgttgt |
269 |
Q |
| |
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|||||||||||||||||||||| || |||||||| | | | |||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||| |
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|
| T |
39561238 |
cacactcattccaattattcaaccttctcttattcttcttttccatctcagcaaccgaagtcactcttattttaatttccacttccacttctggtgttgg |
39561337 |
T |
|
| Q |
270 |
gaacataccctct |
282 |
Q |
| |
|
||||||| ||||| |
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|
| T |
39561338 |
gaacatagcctct |
39561350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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