View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_24 (Length: 293)
Name: NF9488_low_24
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 47898219 - 47897959
Alignment:
| Q |
13 |
tggtgttggctggctgagtagttttccatttaggttggaggtgatcaggttgttaccttcagtcaaaagtctacattatccatataattattggtactaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
47898219 |
tggtgttggctggctgagtagttttccatttaggttggaggtgatcaggttgttaccttcagtcaaaagtctacattatccagataattattggtactaa |
47898120 |
T |
|
| Q |
113 |
aaattgaatttcatcattgaagaatgataaatcacaattaattttttatgttcctccctaccttctttgatgagttttatttgaactgtactgcacattt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47898119 |
aaattgaatttcatcattgaagaatgataaatcacaattaattttttatgttcct-cctaccttctttgatgagttttatttgaactgtactgcacattt |
47898021 |
T |
|
| Q |
213 |
tttatgagtaactttcaatcaagctaatagaaattaaatttattttcatttgtatgattgat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47898020 |
tttatgagtaactttcaatcaagctaatagaaattaaatttattttcatttgtatgattgat |
47897959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 47910488 - 47910373
Alignment:
| Q |
23 |
tggctgagtagttttccatttaggttggaggtgatcaggttgttaccttcagtcaaaagtctacattatccatataattattggtactaaaaattgaatt |
122 |
Q |
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|||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
47910488 |
tggctgagtaattttccatttaggttagaggtgatcaggttgttaccttcattcaaaagtttacattatccagataattataggtactaaaaattgaatt |
47910389 |
T |
|
| Q |
123 |
tcatcattgaagaatg |
138 |
Q |
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|||||||||||||||| |
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| T |
47910388 |
tcatcattgaagaatg |
47910373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 47915401 - 47915305
Alignment:
| Q |
23 |
tggctgagtagttttccatttaggttggaggtgatcaggttgttaccttcagtcaaaagtctacattatccatataattattggtactaaaaattga |
119 |
Q |
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||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||| |||||||||| |
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| T |
47915401 |
tggctgaataattttccatttaggttagaggtgatcaggttgttaccttcattcaaaagtttacattatccagataattataggtattaaaaattga |
47915305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 274
Target Start/End: Complemental strand, 47910178 - 47910089
Alignment:
| Q |
180 |
tgatgagttttatttgaactgtactgcacattttttatgagtaactttcaatcaagctaatagaaattaaatttattttcatttgtatgattgat |
274 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||||||| ||||||| ||||| || |||||||||||| |
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| T |
47910178 |
tgatgagttttatttgaactg-----cgcattttctatgagtaactttcaatcaagataatagatattaaatctatttgcaagtgtatgattgat |
47910089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 30517114 - 30517169
Alignment:
| Q |
23 |
tggctgagtagttttccatttaggttggaggtgatcaggttgttaccttcagtcaa |
78 |
Q |
| |
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||||||||||| |||||| | | |||| |||||||||||||||||||||||||||| |
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| T |
30517114 |
tggctgagtagctttccaatcatgttgcaggtgatcaggttgttaccttcagtcaa |
30517169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 31211042 - 31211186
Alignment:
| Q |
13 |
tggtgttggctggctgagtagttttccatttaggttggaggtgatcaggttgttaccttcagtcaaaagtctacattatccatataattattggtactaa |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
31211042 |
tggtgttggctggctgagtagttttccatttaggttagaggtgatcaggttgttaccttcagtcaaaagtctacattatccagataattattggaactaa |
31211141 |
T |
|
| Q |
113 |
aaattgaatttcatcattgaagaatgataaatcacaattaatttt |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31211142 |
aaattgaatttcatcattgaagaatgataaatcacaattaatttt |
31211186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 157
Target Start/End: Original strand, 31216797 - 31216941
Alignment:
| Q |
13 |
tggtgttggctggctgagtagttttccatttaggttggaggtgatcaggttgttaccttcagtcaaaagtctacattatccatataattattggtactaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
31216797 |
tggtgttggctggctgagtagttttccatttaggttagaggtgatcaggttgttaccttcagtcaaaagtctacattatccagataattattggaactaa |
31216896 |
T |
|
| Q |
113 |
aaattgaatttcatcattgaagaatgataaatcacaattaatttt |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31216897 |
aaattgaatttcatcattgaagaatgataaatcacaattaatttt |
31216941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 31211275 - 31211389
Alignment:
| Q |
154 |
ttttttatgttcctccctaccttctttgatgagttttatttgaactgtactgcacattttttatgagtaactttcaatcaagctaatagaaattaaattt |
253 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31211275 |
ttttatatgttcctcc-taccttctttgatgagttttatttgaactt-----cacattttttatgagtaactttcaatcaagctaatagaaattaaattt |
31211368 |
T |
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| Q |
254 |
attttcatttgtatgattgat |
274 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
31211369 |
atttgcatttgtatgattgat |
31211389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 154 - 274
Target Start/End: Original strand, 31217030 - 31217144
Alignment:
| Q |
154 |
ttttttatgttcctccctaccttctttgatgagttttatttgaactgtactgcacattttttatgagtaactttcaatcaagctaatagaaattaaattt |
253 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31217030 |
ttttatatgttcctcc-taccttctttgatgagttttatttgaactt-----cacattttttatgagtaactttcaatcaagctaatagaaattaaattt |
31217123 |
T |
|
| Q |
254 |
attttcatttgtatgattgat |
274 |
Q |
| |
|
|||| |||||||||||||||| |
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|
| T |
31217124 |
atttgcatttgtatgattgat |
31217144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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