View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_26 (Length: 286)
Name: NF9488_low_26
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 37064588 - 37064319
Alignment:
| Q |
17 |
agcttcaattttttaaaaggacaaataccaaagagcttgttaagtcttcgaaaacttgaaactttaaggttgagtaacaatgaactaaatgaatctattc |
116 |
Q |
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| T |
37064588 |
agcttcaattttttaaaaggacaaataccaaagagcttgttaagtcttcgaaaacttgaaactttaaggttgagtaacaatgaactaaatgaatctattc |
37064489 |
T |
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| Q |
117 |
ctgattggttagggcaacatgaaaatttaaaataccttggtctagctgagaacatgtttcgcggttctatcccttcatctcttggaaaactctcttcctt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37064488 |
ctgattggttagggcaacatgaaaatttaaaataccttggtctagctgagaacatgtttcgcggttctatcccttcatctcttggaaaactctcttcctt |
37064389 |
T |
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| Q |
217 |
ggttgacttaagtgttagctccgattttctgaccggtaatattccaaccagcattggaaaactctttaat |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37064388 |
ggttgacttaagtgttagctccgattttctgaccggtaatattccaaccagcattggaaaactctttaat |
37064319 |
T |
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