View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_27 (Length: 283)
Name: NF9488_low_27
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 222
Target Start/End: Original strand, 52050665 - 52050873
Alignment:
| Q |
14 |
caacagcttctttatatatctccatatatgtaaacttcatcaaaacgttttctgcaaaagcgaatttcaattgctttaggagaatgaaatttgattttgc |
113 |
Q |
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| T |
52050665 |
caacagcttctttatatatctccatatatgcaaacttcatcaaaacgttttctgcaaaagcgaatttcaattgctttaggagaatgaaatttgattttgc |
52050764 |
T |
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| Q |
114 |
ataaatttatagaaagtgtgttattgcacatttaatgaattttaagacattgcatgtgaaagcaaacattaaacataattttaattcatacctaataaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52050765 |
ataaatttatagaaagtgtgttattgcacatttaatgaattttaagacattgcatgtgaaagcaaacattaaacataattttaattcatacctaataaaa |
52050864 |
T |
|
| Q |
214 |
cataataga |
222 |
Q |
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| T |
52050865 |
cataataga |
52050873 |
T |
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