View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_28 (Length: 262)
Name: NF9488_low_28
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 21604261 - 21604507
Alignment:
| Q |
1 |
aaaaaattgtgagcttggatctaagataacctatcaactattataatttggctgaatgttttattattaggccagagaagtttgcaggaatattggaagc |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21604261 |
aaaaaattgtgagcttagatctaagataacctatcaactattataatttggctgaatgttttattattaggccagagaaatttgcaggaatattggaagc |
21604360 |
T |
|
| Q |
101 |
tcgacatttcttacaggaaatacccttatgtcatcataataactcaagaaaatttagatattgttcgtaannnnnnnnnnnnnnnnnnnnnnnnaaggaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21604361 |
tcgatatttcttacaggaaatacccttatgtcatcataataactcaagaaaatttagatattgttcgtaatttctttttctttttctttcttttaaggaa |
21604460 |
T |
|
| Q |
201 |
tcatctgttttatcatttataaatacaagcacataggagctaattga |
247 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21604461 |
tcgtctgttttatcatttataaatacaagcacataggagctaattga |
21604507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 38028273 - 38028519
Alignment:
| Q |
1 |
aaaaaattgtgagcttggatctaagataacctatcaactattataatttggctgaatgttttattattaggccagagaagtttgcaggaatattggaagc |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38028273 |
aaaaaattgtgagcttagatctaagataacctatcaactattataatttggctgaatgttttattattaggccagagaaatttgcaggaatattggaagc |
38028372 |
T |
|
| Q |
101 |
tcgacatttcttacaggaaatacccttatgtcatcataataactcaagaaaatttagatattgttcgtaannnnnnnnnnnnnnnnnnnnnnnnaaggaa |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38028373 |
tcgatatttcttacaggaaatacccttatgtcatcataataactcaagaaaatttagatattgttcgtaatttctttttctttttctttcttttaaggaa |
38028472 |
T |
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| Q |
201 |
tcatctgttttatcatttataaatacaagcacataggagctaattga |
247 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38028473 |
tcgtctgttttatcatttataaatacaagcacataggagctaattga |
38028519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 38033307 - 38033473
Alignment:
| Q |
1 |
aaaaaattgtgagcttggatctaagataacctatcaactattataatttggctgaatgttttattattaggccagagaagtttgcaggaatattggaagc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38033307 |
aaaaaattgtgagcttagatctaagataacctatcaactattataatttggctgaatgttttattattaggccagagaaatttgcaggaatattggaagc |
38033406 |
T |
|
| Q |
101 |
tcgacatttcttacaggaaatacccttatgtcatcataataactcaagaaaatttagatattgttcg |
167 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
38033407 |
tcgacatttcttacaggagatacccttatgtcatcattataactcaagaaaatttagatattgttcg |
38033473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 50910583 - 50910454
Alignment:
| Q |
1 |
aaaaaattgtgagcttggatctaagataacctatcaactattataatttggctgaatgttttattattaggccagagaagtttgcaggaatattggaagc |
100 |
Q |
| |
|
|||||||||||||||| |||| |||||| | ||||||||| | || |||||||||||||||| |||||||| |||| |||||||||||||| | ||| |
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| T |
50910583 |
aaaaaattgtgagcttagatccaagata-cttatcaactactttagtttggctgaatgtttt---attaggcc--agaaatttgcaggaatattcg-agc |
50910491 |
T |
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| Q |
101 |
tcgacatttcttacaggaaatacccttatgtcatcat |
137 |
Q |
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|||| ||| ||||||| | || | ||||||||||||| |
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| T |
50910490 |
tcgatattgcttacagcacattctcttatgtcatcat |
50910454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 38033501 - 38033553
Alignment:
| Q |
195 |
aaggaatcatctgttttatcatttataaatacaagcacataggagctaattga |
247 |
Q |
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||||||||| | ||||||| ||||||||||| ||||||||||||||| ||||| |
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| T |
38033501 |
aaggaatcaccagttttataatttataaatagaagcacataggagctgattga |
38033553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 38036308 - 38036470
Alignment:
| Q |
1 |
aaaaaattgtgagcttggatctaagataacctatcaactattataatttggctgaatgttttattattaggccagagaagtttgcaggaatattggaagc |
100 |
Q |
| |
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||||| |||||||||| |||| |||||| | ||| ||||| ||| ||||||||||||| ||||||| | ||||||| |||||||||||||| || | |
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| T |
38036308 |
aaaaatttgtgagctttgatccaagatagcttatacactat-atagtttggctgaatgtgttattat---gtcagagaaatttgcaggaatattcgat-c |
38036402 |
T |
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| Q |
101 |
tcgacatttcttacaggaaatacccttatgtcatcataataact---caagaaaatttagatattgtt |
165 |
Q |
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|||| | | ||||||| | |||||||||| ||||||| |||| |||| |||||||||||||||| |
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| T |
38036403 |
tcgatactgcttacagcacatacccttatctcatcattataaaaaaccaaggaaatttagatattgtt |
38036470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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