View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9488_low_3 (Length: 760)

Name: NF9488_low_3
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9488_low_3
NF9488_low_3
[»] chr1 (19 HSPs)
chr1 (433-724)||(19901042-19901332)
chr1 (112-182)||(19899074-19899144)
chr1 (289-345)||(50824867-50824923)
chr1 (63-115)||(19898192-19898242)
chr1 (289-345)||(33358047-33358103)
chr1 (396-435)||(18583814-18583853)
chr1 (289-346)||(15015524-15015580)
chr1 (289-345)||(29147762-29147819)
chr1 (396-433)||(49786968-49787005)
chr1 (289-345)||(29154904-29154960)
chr1 (309-345)||(46543332-46543368)
chr1 (289-345)||(47721535-47721591)
chr1 (289-345)||(47728527-47728583)
chr1 (289-345)||(50328030-50328086)
chr1 (290-345)||(15704951-15705006)
chr1 (290-345)||(50881999-50882054)
chr1 (289-350)||(13489788-13489849)
chr1 (346-395)||(19899155-19899203)
chr1 (396-433)||(23443413-23443450)
[»] chr3 (12 HSPs)
chr3 (289-343)||(52937309-52937363)
chr3 (289-337)||(18741242-18741290)
chr3 (289-345)||(6999296-6999352)
chr3 (291-345)||(23183541-23183595)
chr3 (396-434)||(43472714-43472752)
chr3 (396-432)||(2358894-2358930)
chr3 (290-354)||(3953355-3953419)
chr3 (289-345)||(37411001-37411057)
chr3 (289-345)||(51465803-51465859)
chr3 (396-434)||(2358053-2358091)
chr3 (289-350)||(36412249-36412311)
chr3 (289-342)||(46019588-46019641)
[»] chr8 (15 HSPs)
chr8 (289-345)||(30439395-30439451)
chr8 (289-345)||(36885377-36885433)
chr8 (289-345)||(45508659-45508715)
chr8 (396-435)||(31520150-31520189)
chr8 (289-343)||(14707234-14707288)
chr8 (289-343)||(45519682-45519736)
chr8 (289-346)||(23792978-23793035)
chr8 (289-350)||(31597074-31597135)
chr8 (289-345)||(12707276-12707332)
chr8 (289-344)||(36568087-36568142)
chr8 (290-345)||(42569618-42569673)
chr8 (290-340)||(3441305-3441355)
chr8 (396-434)||(21004999-21005037)
chr8 (396-429)||(31519332-31519365)
chr8 (396-433)||(41530519-41530556)
[»] chr2 (20 HSPs)
chr2 (289-341)||(11091252-11091304)
chr2 (289-345)||(36643973-36644029)
chr2 (289-345)||(4023239-4023295)
chr2 (289-345)||(23352796-23352852)
chr2 (289-345)||(32869952-32870008)
chr2 (291-345)||(3012741-3012795)
chr2 (289-343)||(13347705-13347759)
chr2 (289-343)||(22525887-22525941)
chr2 (396-434)||(36949210-36949248)
chr2 (290-343)||(36211951-36212004)
chr2 (289-345)||(10711850-10711906)
chr2 (289-345)||(13765526-13765582)
chr2 (289-348)||(25881670-25881729)
chr2 (289-339)||(11167413-11167463)
chr2 (289-351)||(36517322-36517384)
chr2 (289-342)||(7574561-7574614)
chr2 (289-342)||(28245853-28245906)
chr2 (289-350)||(35589271-35589332)
chr2 (289-346)||(37105764-37105821)
chr2 (289-342)||(41586560-41586613)
[»] chr6 (9 HSPs)
chr6 (289-343)||(1369486-1369540)
chr6 (289-345)||(754327-754383)
chr6 (289-345)||(6531069-6531125)
chr6 (290-340)||(5028160-5028210)
chr6 (289-345)||(3832589-3832645)
chr6 (289-345)||(13143271-13143327)
chr6 (289-345)||(18141190-18141246)
chr6 (290-342)||(32046825-32046877)
chr6 (295-340)||(6856057-6856102)
[»] chr7 (8 HSPs)
chr7 (289-345)||(7817762-7817818)
chr7 (290-345)||(43573432-43573487)
chr7 (290-343)||(42555691-42555744)
chr7 (396-436)||(8154812-8154852)
chr7 (289-345)||(11352863-11352919)
chr7 (289-345)||(41894041-41894097)
chr7 (289-352)||(10055514-10055577)
chr7 (181-218)||(11564893-11564930)
[»] chr5 (10 HSPs)
chr5 (289-345)||(34270453-34270509)
chr5 (289-345)||(41175595-41175651)
chr5 (289-343)||(15952936-15952990)
chr5 (289-341)||(1839238-1839290)
chr5 (289-345)||(8675322-8675378)
chr5 (289-345)||(10649561-10649617)
chr5 (289-345)||(15478784-15478840)
chr5 (400-436)||(26190572-26190608)
chr5 (289-345)||(43441864-43441920)
chr5 (289-350)||(34124747-34124808)
[»] chr4 (16 HSPs)
chr4 (289-345)||(39344869-39344925)
chr4 (289-345)||(47099146-47099202)
chr4 (309-347)||(13139293-13139331)
chr4 (289-347)||(26718494-26718552)
chr4 (289-347)||(26731122-26731180)
chr4 (289-345)||(12138979-12139035)
chr4 (289-345)||(17683467-17683523)
chr4 (289-345)||(22819775-22819831)
chr4 (289-345)||(43769837-43769893)
chr4 (396-432)||(50392680-50392716)
chr4 (294-341)||(32696681-32696728)
chr4 (396-431)||(34972731-34972766)
chr4 (289-336)||(49896564-49896611)
chr4 (289-343)||(46405865-46405919)
chr4 (399-432)||(23524475-23524508)
chr4 (289-345)||(53654638-53654695)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 433 - 724
Target Start/End: Original strand, 19901042 - 19901332
Alignment:
Q  433 ttatcagttaccttgggtgatgtttcaaccaaggccctttgttcatgcacatctgcttgtacatgttgttcttcatttgtcgcataaggctcaggaatag 532  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19901042 ttatcagttaccttgggtgatgtttcaaccaaggccctttgttcatgcacatctgcttgtacatgttgttcttcatttgtcgcataaggcccaggaatag 19901141  T
Q  533 aatcagaatgtgtaggttgttcgtttgcaatgatttttacctcacatgattcagcttgtaccgtgccatgttctgtaggtgcatattgtgaatacctatt 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19901142 aatcagaatgtgtaggttgttcgtttgcaatgatttttacctcacatgattcagcttgtaccgtgccatgttctgtaggtgcatattgtg-atacctatt 19901240  T
Q  633 gctgaacgataggaatgtcaacattcagtgtctcgaatgccttagatgagccgatgcttaaaggattctcttttgtcagccaaccttgcaat 724  Q
    ||||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  19901241 gctgaacgataggaatgtcaacattcagtctctcaaatgcatcagatgagccgatgcttgaaggattctcttttgtcagccaaccttgcaat 19901332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 19899074 - 19899144
Alignment:
Q  112 gtagttgttccctcatacgtgctgaatttactcaccatcgttaccatctatctacaagtctagtcttacga 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19899074 gtagttgttccctcatacgtgctgaatttactcaccatcgttaccatctatctacaagtctagtcttacga 19899144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 50824867 - 50824923
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  50824867 gtaaattatggttgtatcataagttgtccaccaaatggttgttcaaataacactcct 50824923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 19898192 - 19898242
Alignment:
Q  63 tacggatcatactcaatactcatacagttttaactgcagtcaagaccatgtag 115  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  19898192 tacggatcatactcaatactcata--gttttaactgcagtcaagaccatgtag 19898242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 33358103 - 33358047
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  33358103 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcct 33358047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 396 - 435
Target Start/End: Original strand, 18583814 - 18583853
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactctta 435  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  18583814 cgcgcgagaatcctatagggtgggaaaagtaatactctta 18583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 15015524 - 15015580
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctt 346  Q
    |||||||||||||||  ||||| ||||| ||||||| |||||||||||||||||||||    
T  15015524 gtaaattatggttgtcccataa-ttatcaaccaaatagttgttcaaataacactcctt 15015580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 29147819 - 29147762
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaa-tggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||||||||| |||||| || |||||||||||||||||||    
T  29147819 gtaaattatggttgtcacataaattatcaaccaaattgattgttcaaataacactcct 29147762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 49786968 - 49787005
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactct 433  Q
    |||||||||||||||||||||||||| |||||||||||    
T  49786968 cgcgcgagaatcctatagggtgggaaaagtaatactct 49787005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 29154904 - 29154960
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    ||||||||| |||||  ||||| || || ||||||||||||||||||||||||||||    
T  29154904 gtaaattatcgttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 29154960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 309 - 345
Target Start/End: Complemental strand, 46543368 - 46543332
Alignment:
Q  309 aaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||| ||||||||||||||||||||||||||||    
T  46543368 aaattatcaaccaaatggttgttcaaataacactcct 46543332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 47721535 - 47721591
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| || ||||| ||||||||||| |||||||||||||    
T  47721535 gtaaattatggttgtcccataagttgtccactaaatggttgtttaaataacactcct 47721591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 47728527 - 47728583
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| || ||||| ||||||||||| |||||||||||||    
T  47728527 gtaaattatggttgtcccataagttgtccactaaatggttgtttaaataacactcct 47728583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 50328086 - 50328030
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  50328086 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 50328030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 15705006 - 15704951
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    ||||||||||||||   | || ||||| ||||||||||||||||||||||||||||    
T  15705006 taaattatggttgtcctaaaagttatcaaccaaatggttgttcaaataacactcct 15704951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 50882054 - 50881999
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    ||||||||| ||||  |||||||| || | ||||||||||||||||||||||||||    
T  50882054 taaattatgattgtcacataaattgtcaatcaaatggttgttcaaataacactcct 50881999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 13489788 - 13489849
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttattt 350  Q
    |||||||||||||||  || || || || ||||||| |||||||||||||||||||| ||||    
T  13489788 gtaaattatggttgtcccagaagttgtcaaccaaatagttgttcaaataacactcctcattt 13489849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 395
Target Start/End: Original strand, 19899155 - 19899203
Alignment:
Q  346 tatttctataactattttgcttgctacaactttttgtgtcaacttctctt 395  Q
    ||||||||||||||| ||||||| |||||| |||||||| ||||||||||    
T  19899155 tatttctataactatcttgcttggtacaac-ttttgtgttaacttctctt 19899203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 433
Target Start/End: Original strand, 23443413 - 23443450
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactct 433  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  23443413 cgcgcgagaatcctacagggtgggaaaagtaatactct 23443450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 52937309 - 52937363
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  52937309 gtaaattatggttgtctcaaaaattatcaaccaaatggttgttcaaataacactc 52937363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 18741242 - 18741290
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaata 337  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  18741242 gtaaattatggttgtcccataaattatccaccaaatggttgttcaaata 18741290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 6999296 - 6999352
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  6999296 gtaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 6999352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Original strand, 23183541 - 23183595
Alignment:
Q  291 aaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    ||||||||||||||| |||| || || | ||||||||||||||||||||||||||    
T  23183541 aaattatggttgtataataagttgtcaatcaaatggttgttcaaataacactcct 23183595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 43472752 - 43472714
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactctt 434  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  43472752 cgcgcgagaatcctatagggtgggaaaagtaatactctt 43472714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 2358894 - 2358930
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactc 432  Q
    |||||||||||||||||||||||||| ||||||||||    
T  2358894 cgcgcgagaatcctatagggtgggaaaagtaatactc 2358930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 3953419 - 3953355
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttatttctat 354  Q
    ||||||||| |||| ||| ||||| || |||||||| |||||||||||||||||||  |||||||    
T  3953419 taaattatgattgtctcaaaaattgtcaaccaaatgattgttcaaataacactcctcttttctat 3953355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 37411001 - 37411057
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    ||||||||||||||| |||||  || || || |||||||||||||||||||||||||    
T  37411001 gtaaattatggttgtttcataggttgtcaactaaatggttgttcaaataacactcct 37411057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 51465859 - 51465803
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  51465859 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 51465803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 396 - 434
Target Start/End: Complemental strand, 2358091 - 2358053
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactctt 434  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  2358091 cgcgcgagaatcctatagggtgggaaaaataatactctt 2358053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 36412249 - 36412311
Alignment:
Q  289 gtaaattatggttgtatcataaattatcca-ccaaatggttgttcaaataacactccttattt 350  Q
    |||||||||||||||  ||||| || || | ||||||||||||||||||||||||||| ||||    
T  36412249 gtaaattatggttgtcccataagttgtcaaaccaaatggttgttcaaataacactcctcattt 36412311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 46019588 - 46019641
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 342  Q
    |||||||||||||||  || || || || |||||||||||||||||||||||||    
T  46019588 gtaaattatggttgttccaaaagttgtcaaccaaatggttgttcaaataacact 46019641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 30439451 - 30439395
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| ||||| ||||||||||||||||||||||||||||    
T  30439451 gtaaattatggttgtcacataagttatcaaccaaatggttgttcaaataacactcct 30439395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 36885433 - 36885377
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| || |||||||||||||||||||||||||||||||    
T  36885433 gtaaattatggttgtcccataagttgtccaccaaatggttgttcaaataacactcct 36885377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 45508659 - 45508715
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||||||||| || |||| ||||||||||||||||||||    
T  45508659 gtaaattatggttgtcccataaattatcaactaaattgttgttcaaataacactcct 45508715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 396 - 435
Target Start/End: Original strand, 31520150 - 31520189
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactctta 435  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  31520150 cgcgcgagaatcctatagggtgggaaaagtaatactctta 31520189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 14707288 - 14707234
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    |||||||||| |||| |||||| || |||||||||| ||||||||||||||||||    
T  14707288 gtaaattatgattgtctcataagttgtccaccaaatagttgttcaaataacactc 14707234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 45519682 - 45519736
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    ||||||||||||| | ||||| ||| || ||||||||||||||||||||||||||    
T  45519682 gtaaattatggttatctcatacattgtcaaccaaatggttgttcaaataacactc 45519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 23793035 - 23792978
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctt 346  Q
    ||||||||| ||||| ||||||||| || |||||||||||||| ||||||||| ||||    
T  23793035 gtaaattatagttgtctcataaattgtcaaccaaatggttgttgaaataacacccctt 23792978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 31597074 - 31597135
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttattt 350  Q
    |||||||||| |||| ||| || ||||| | |||||||||||||||||||||||||| ||||    
T  31597074 gtaaattatgattgtctcaaaagttatcaatcaaatggttgttcaaataacactcctcattt 31597135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 12707276 - 12707332
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| |  || ||||||||||||||||||||||||||||    
T  12707276 gtaaattatggttgtcccataagtgctcaaccaaatggttgttcaaataacactcct 12707332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 344
Target Start/End: Original strand, 36568087 - 36568142
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcc 344  Q
    |||||||||||||||  ||||| || || | |||||||||||||||||||||||||    
T  36568087 gtaaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcc 36568142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 42569673 - 42569618
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    ||||||||||||||   | |||||||| ||||||||||||||||||||| ||||||    
T  42569673 taaattatggttgtcctaaaaattatcaaccaaatggttgttcaaataatactcct 42569618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 340
Target Start/End: Original strand, 3441305 - 3441355
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataaca 340  Q
    ||||||||||||||  ||||||||||| || |||| |||||||||||||||    
T  3441305 taaattatggttgtcccataaattatcaactaaatagttgttcaaataaca 3441355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 21004999 - 21005037
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactctt 434  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  21004999 cgcgcgagaatcctatagggtgggaaaagtaatagtctt 21005037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 429
Target Start/End: Complemental strand, 31519365 - 31519332
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaata 429  Q
    |||||||||||||||||||||||||| |||||||    
T  31519365 cgcgcgagaatcctatagggtgggaaaagtaata 31519332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 396 - 433
Target Start/End: Complemental strand, 41530556 - 41530519
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactct 433  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  41530556 cgcgcgagaatcctatagggtgagaaaagtaatactct 41530519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 11091304 - 11091252
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacac 341  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  11091304 gtaaattatggttgtctcataaattatcaaccaaattgttgttcaaataacac 11091252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 36644029 - 36643973
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  |||||||| || ||||||||||||||||||||||||||||    
T  36644029 gtaaattatggttgtcccataaattgtcaaccaaatggttgttcaaataacactcct 36643973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 4023295 - 4023239
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||| |||| ||||||||| || |||||||||||||| |||||||||||||    
T  4023295 gtaaattatgattgtctcataaattgtcaaccaaatggttgttgaaataacactcct 4023239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 23352852 - 23352796
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  23352852 gtaaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 23352796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 32869952 - 32870008
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || ||||| || ||||||||||||||||||||||||||||    
T  32869952 gtaaattatggttgtcccaaaaattgtcaaccaaatggttgttcaaataacactcct 32870008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 3012795 - 3012741
Alignment:
Q  291 aaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  3012795 aaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacactcct 3012741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 13347759 - 13347705
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    |||||||||||||||  || ||||| || ||||||||||||||||||||||||||    
T  13347759 gtaaattatggttgtcccaaaaattgtcaaccaaatggttgttcaaataacactc 13347705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 22525941 - 22525887
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    ||||||||||||||| ||| || ||||| | ||||||||||||||||||||||||    
T  22525941 gtaaattatggttgtctcaaaagttatcaatcaaatggttgttcaaataacactc 22525887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 36949210 - 36949248
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactctt 434  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  36949210 cgcgcgagaatcctatagggtgggaaaagtaatactctt 36949248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Complemental strand, 36212004 - 36211951
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    ||||||||| ||||  ||||| ||||| ||||||||||||||||||||||||||    
T  36212004 taaattatgattgtcacataatttatcaaccaaatggttgttcaaataacactc 36211951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 10711850 - 10711906
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||| |||| ||| || ||||| ||||||| ||||||||||||||||||||    
T  10711850 gtaaattatgattgtttcaaaagttatcaaccaaatagttgttcaaataacactcct 10711906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 13765526 - 13765582
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  13765526 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 13765582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 348
Target Start/End: Original strand, 25881670 - 25881729
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttat 348  Q
    ||||||||||| ||| ||| || || || ||||||||||||||||||||| |||||||||    
T  25881670 gtaaattatggctgtttcaaaagttgtcaaccaaatggttgttcaaataagactccttat 25881729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 339
Target Start/End: Complemental strand, 11167463 - 11167413
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataac 339  Q
    |||||||||||||||  ||||| ||||| | ||||||||||||||||||||    
T  11167463 gtaaattatggttgttacataagttatcaagcaaatggttgttcaaataac 11167413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 351
Target Start/End: Original strand, 36517322 - 36517384
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttatttc 351  Q
    |||||||||| ||||  || || ||||| | ||||| ||||||||||||||||||||||||||    
T  36517322 gtaaattatgattgtcccaaaagttatcaatcaaatagttgttcaaataacactccttatttc 36517384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 7574561 - 7574614
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 342  Q
    ||||||||| |||||  || ||||| || |||||||||||||||||||||||||    
T  7574561 gtaaattatagttgttccaaaaattgtcaaccaaatggttgttcaaataacact 7574614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 342
Target Start/End: Original strand, 28245853 - 28245906
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 342  Q
    |||||||| |||||| ||| || || || |||||||||||||||||||||||||    
T  28245853 gtaaattaaggttgtttcaaaagttgtcaaccaaatggttgttcaaataacact 28245906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 35589332 - 35589271
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttattt 350  Q
    |||||||||||||||  || |||||||| || |||| |||||| ||||||||||||| ||||    
T  35589332 gtaaattatggttgtcccaaaaattatcaactaaatagttgtttaaataacactcctcattt 35589271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 37105764 - 37105821
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctt 346  Q
    |||||||||||||||  || || || || ||||||| |||||||||||||||||||||    
T  37105764 gtaaattatggttgtcacaaaagttgtcaaccaaatagttgttcaaataacactcctt 37105821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 41586613 - 41586560
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 342  Q
    |||||||||||||||  ||||| || || || ||||||||||||||||||||||    
T  41586613 gtaaattatggttgttccataagttgtcaactaaatggttgttcaaataacact 41586560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 1369486 - 1369540
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    ||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||    
T  1369486 gtaaattatggttgtctcaaaaattgtcaaccaaatggttgttcaaataacactc 1369540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 754383 - 754327
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || ||||| || ||||||||||||||||||||||||||||    
T  754383 gtaaattatggttgttccaaaaattgtcaaccaaatggttgttcaaataacactcct 754327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 6531125 - 6531069
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||| | ||||| ||||||||||||||||||||||||||||    
T  6531125 gtaaattatggttgtcccattagttatcaaccaaatggttgttcaaataacactcct 6531069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 5028210 - 5028160
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataaca 340  Q
    |||||||||||||| |||||| ||||| |||||||| ||||||||||||||    
T  5028210 taaattatggttgtctcataagttatcaaccaaatgattgttcaaataaca 5028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 3832589 - 3832645
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| || || | ||||||||||||||||||||||||||    
T  3832589 gtaaattatggttgtcccataagttgtcaatcaaatggttgttcaaataacactcct 3832645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 13143327 - 13143271
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  13143327 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 13143271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 18141246 - 18141190
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  18141246 gtaaattatggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcct 18141190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 32046825 - 32046877
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacact 342  Q
    ||||||||||||||  ||||| || || |||||||||||||||||||||||||    
T  32046825 taaattatggttgtcccataagttgtcaaccaaatggttgttcaaataacact 32046877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 6856102 - 6856057
Alignment:
Q  295 tatggttgtatcataaattatccaccaaatggttgttcaaataaca 340  Q
    |||| |||| ||||||||| || |||||||||||||||||||||||    
T  6856102 tatgtttgtctcataaattgtcaaccaaatggttgttcaaataaca 6856057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 7817762 - 7817818
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  7817762 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcct 7817818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 290 - 345
Target Start/End: Complemental strand, 43573487 - 43573432
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||    
T  43573487 taaattatggttgtctcaaaaattgtcaaccaaatgattgttcaaataacactcct 43573432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 42555691 - 42555744
Alignment:
Q  290 taaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    |||||||||||||| ||| || || || ||||||||||||||||||||||||||    
T  42555691 taaattatggttgtctcaaaagttgtcaaccaaatggttgttcaaataacactc 42555744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 436
Target Start/End: Complemental strand, 8154852 - 8154812
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactcttat 436  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  8154852 cgcgcgagaatcctataggatgggaaaagtaatactcttat 8154812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 11352919 - 11352863
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  11352919 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 11352863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 41894041 - 41894097
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || ||||| || || |||||||||||||||||||||||||    
T  41894041 gtaaattatggttgtcacaaaaattgtcaactaaatggttgttcaaataacactcct 41894097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 10055577 - 10055514
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttatttct 352  Q
    ||||||||| |||||  ||||| || || |||||||||||||| |||||||||||||| |||||    
T  10055577 gtaaattatagttgtcccataagttgtcaaccaaatggttgtttaaataacactccttttttct 10055514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 11564893 - 11564930
Alignment:
Q  181 gataaatgatatttgaatatttattttgtgaaaacttt 218  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  11564893 gataaatgatatttgaacatttattttgtgacaacttt 11564930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 34270453 - 34270509
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    ||||||||||||||| ||| || || || ||||||||||||||||||||||||||||    
T  34270453 gtaaattatggttgtctcaaaatttgtcaaccaaatggttgttcaaataacactcct 34270509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 41175651 - 41175595
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||||    
T  41175651 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactcct 41175595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 15952990 - 15952936
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    |||||||||||||||  ||||| || || ||||||||||||||||||||||||||    
T  15952990 gtaaattatggttgtcacataagttgtcaaccaaatggttgttcaaataacactc 15952936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 1839290 - 1839238
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacac 341  Q
    |||||||||||||||  ||||||||||| ||||||||| | ||||||||||||    
T  1839290 gtaaattatggttgtcccataaattatcaaccaaatggcttttcaaataacac 1839238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 8675378 - 8675322
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  8675378 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 8675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 10649561 - 10649617
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  10649561 gtaaattatggttgtcacaaaagttgtcaaccaaatggttgttcaaataacactcct 10649617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 15478784 - 15478840
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || ||||| || ||||||| ||||||||||||||||||||    
T  15478784 gtaaattatggttgttccaaaaattgtcaaccaaatagttgttcaaataacactcct 15478840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 436
Target Start/End: Original strand, 26190572 - 26190608
Alignment:
Q  400 cgagaatcctatagggtgggaacagtaatactcttat 436  Q
    |||||||||||||||||||||| ||||||||||||||    
T  26190572 cgagaatcctatagggtgggaaaagtaatactcttat 26190608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 43441864 - 43441920
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    ||||||||||||||| | | || || || ||||||||||||||||||||||||||||    
T  43441864 gtaaattatggttgtcttaaaagttgtcaaccaaatggttgttcaaataacactcct 43441920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 350
Target Start/End: Original strand, 34124747 - 34124808
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactccttattt 350  Q
    ||||||||||||||| | | ||||| || |  ||||||||||||||||||||||||| ||||    
T  34124747 gtaaattatggttgtcttaaaaattgtcaattaaatggttgttcaaataacactcctcattt 34124808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 39344925 - 39344869
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||| |||| ||| || ||||| ||||||||||||||||||||||||||||    
T  39344925 gtaaattatgattgtctcaaaagttatcaaccaaatggttgttcaaataacactcct 39344869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 47099146 - 47099202
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || ||||| ||||||||||||||||||||||||||||    
T  47099146 gtaaattatggttgtcccaaaagttatcaaccaaatggttgttcaaataacactcct 47099202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 13139293 - 13139331
Alignment:
Q  309 aaattatccaccaaatggttgttcaaataacactcctta 347  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  13139293 aaattatcaaccaaatggttgttcaaataacactcctta 13139331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 26718494 - 26718552
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctta 347  Q
    |||||||||| ||||  || |||||||| ||||||||||| ||||||||||||||||||    
T  26718494 gtaaattatgattgtcccaaaaattatcaaccaaatggttattcaaataacactcctta 26718552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 347
Target Start/End: Original strand, 26731122 - 26731180
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcctta 347  Q
    |||||||||| ||||  || |||||||| ||||||||||| ||||||||||||||||||    
T  26731122 gtaaattatgattgtcccaaaaattatcaaccaaatggttattcaaataacactcctta 26731180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 12138979 - 12139035
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| ||||| | ||||||||||||||||||||| ||||    
T  12138979 gtaaattatggttgttacataagttatcaatcaaatggttgttcaaataacattcct 12139035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 17683467 - 17683523
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  17683467 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 17683523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 22819775 - 22819831
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  || || || || ||||||||||||||||||||||||||||    
T  22819775 gtaaattatggttgtcccaaaagttgtcaaccaaatggttgttcaaataacactcct 22819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 43769837 - 43769893
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||| ||||| || |||| ||||||||||||||||||||    
T  43769837 gtaaattatggttgtcgcataagttatcaacaaaatagttgttcaaataacactcct 43769893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 432
Target Start/End: Original strand, 50392680 - 50392716
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatactc 432  Q
    |||||||||||||||||||||||||| ||||||||||    
T  50392680 cgcgcgagaatcctatagggtgggaaaagtaatactc 50392716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 341
Target Start/End: Complemental strand, 32696728 - 32696681
Alignment:
Q  294 ttatggttgtatcataaattatccaccaaatggttgttcaaataacac 341  Q
    |||||||||||  ||||||| || ||||||||||||||||||||||||    
T  32696728 ttatggttgtacaataaattgtcaaccaaatggttgttcaaataacac 32696681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 396 - 431
Target Start/End: Complemental strand, 34972766 - 34972731
Alignment:
Q  396 cgcgcgagaatcctatagggtgggaacagtaatact 431  Q
    |||||||||||||||||||||||||| |||||||||    
T  34972766 cgcgcgagaatcctatagggtgggaaaagtaatact 34972731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 49896611 - 49896564
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaat 336  Q
    ||||||||||||||| |||| | || ||||||||||||||||||||||    
T  49896611 gtaaattatggttgtctcatgagttgtccaccaaatggttgttcaaat 49896564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 289 - 343
Target Start/End: Complemental strand, 46405919 - 46405865
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaatggttgttcaaataacactc 343  Q
    |||||||||||||||   | |||||||| |||||||| |||||||||||||||||    
T  46405919 gtaaattatggttgtccaaaaaattatcaaccaaatgattgttcaaataacactc 46405865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 432
Target Start/End: Original strand, 23524475 - 23524508
Alignment:
Q  399 gcgagaatcctatagggtgggaacagtaatactc 432  Q
    ||||||||||||||||||||||| ||||||||||    
T  23524475 gcgagaatcctatagggtgggaaaagtaatactc 23524508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 53654695 - 53654638
Alignment:
Q  289 gtaaattatggttgtatcataaattatccaccaaa-tggttgttcaaataacactcct 345  Q
    |||||||||||||||  ||||||||||| | |||| ||||| ||||||||||||||||    
T  53654695 gtaaattatggttgtcccataaattatcaatcaaattggttattcaaataacactcct 53654638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University