View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9488_low_31 (Length: 246)

Name: NF9488_low_31
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9488_low_31
NF9488_low_31
[»] chr2 (3 HSPs)
chr2 (14-241)||(18914346-18914573)
chr2 (52-237)||(18909602-18909790)
chr2 (32-231)||(18921504-18921706)
[»] scaffold0464 (1 HSPs)
scaffold0464 (51-231)||(7116-7299)
[»] chr3 (2 HSPs)
chr3 (51-224)||(12735638-12735814)
chr3 (96-196)||(32579711-32579811)
[»] chr7 (7 HSPs)
chr7 (101-231)||(19879663-19879793)
chr7 (94-231)||(19778721-19778861)
chr7 (117-214)||(19721196-19721293)
chr7 (96-199)||(19888557-19888660)
chr7 (134-225)||(19357087-19357181)
chr7 (134-223)||(19351819-19351911)
chr7 (93-224)||(22027812-22027943)
[»] chr6 (1 HSPs)
chr6 (96-199)||(14748518-14748621)
[»] chr4 (1 HSPs)
chr4 (119-214)||(2910180-2910275)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 241
Target Start/End: Complemental strand, 18914573 - 18914346
Alignment:
Q  14 caaaaacatcactaactactcatgaattcccctatagcaaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaattta 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18914573 caaaaacatcactaactactcatgaattcccctatagcaaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaactta 18914474  T
Q  114 tcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaa 213  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18914473 ttgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaa 18914374  T
Q  214 attgcaccttcatcgatcaccacgaaac 241  Q
    ||||||||||||||||||||||||||||    
T  18914373 attgcaccttcatcgatcaccacgaaac 18914346  T

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Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 52 - 237
Target Start/End: Complemental strand, 18909790 - 18909602
Alignment:
Q  52 aaagtctccgcattcaaacaactgcgttc---caacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaact 148  Q
    |||||||||||||||||||| | |||||    |||| |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||||||||||||    
T  18909790 aaagtctccgcattcaaacagcggcgttgtttcaacatcgctgttaatccttcttgacgaactcatcgcagaaatcctttcacgacttcctgtcaaaact 18909691  T
Q  149 ctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaattgcaccttcatcgatcaccacg 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  18909690 ctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatcctttcttcgccaaattgcaccttcaccgatcaccacg 18909602  T

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Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 18921706 - 18921504
Alignment:
Q  32 ctcatgaattcccctatagcaaagtctccgcattcaaacaactgcgtt---ccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatccttt 128  Q
    |||||||||||||||  |||||||||||| |||  ||||| | |||||   ||| |||||||||||||||||||||||||  | ||||||||||||||||    
T  18921706 ctcatgaattcccctccagcaaagtctccacatagaaacagcggcgttgttccagcgtcgctgttaatccttcttgatgagctcatcgcagaaatccttt 18921607  T
Q  129 ctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaattgcaccttcatcg 228  Q
    | || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18921606 cacgtcttccagtaaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaaatgcaccttcatcg 18921507  T
Q  229 atc 231  Q
    |||    
T  18921506 atc 18921504  T

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Target: scaffold0464 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 231
Target Start/End: Original strand, 7116 - 7299
Alignment:
Q  51 caaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactct 150  Q
    ||||||||||||  ||||||  ||||| | ||||||||||| || |||||||||| ||| |||||| |||||| ||||| ||||||||||||||||||||    
T  7116 caaagtctccgccatcaaactgctgcgctacaacgtcgctgatagtccttcttgacgaacttatcgtagaaattctttcacgacttcctgtcaaaactct 7215  T
Q  151 gatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctc---atccttccttcgtcaaattgcaccttcatcgatc 231  Q
    ||||||| | ||||| || |||||||||| |||||||||||| ||||   ||||||||||||  ||| |||||||||| |||||    
T  7216 gatgcaattcaaatgtgtctgcaaatcatggaaaaccctaatctctcatgatccttccttcgctaaactgcaccttcagcgatc 7299  T

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Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 51 - 224
Target Start/End: Complemental strand, 12735814 - 12735638
Alignment:
Q  51 caaagtctccgcattcaaacaactgcgttccaacgtcgctgttaatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactct 150  Q
    |||||||||||| |||| ||  ||||| | |||| |||||| || |||||||||||||| |||||| |||||| ||||| |||||||||||||||||| |    
T  12735814 caaagtctccgccttcatactgctgcgctacaacctcgctgatagtccttcttgatgaacttatcgtagaaattctttcacgacttcctgtcaaaacttt 12735715  T
Q  151 gatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctc---atccttccttcgtcaaattgcaccttc 224  Q
    ||||||| | ||||| ||||||||||||| |||||||||||| ||||   ||||||||||||  ||| |||||||||    
T  12735714 gatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatctctcatgatccttccttcgctaaactgcaccttc 12735638  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 32579811 - 32579711
Alignment:
Q  96 tccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttc 195  Q
    |||| ||||||||| | ||||  |||||||| || || ||||||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  32579811 tcctccttgatgaactcatcgtggaaatcctatcacgccttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 32579712  T
Q  196 t 196  Q
    |    
T  32579711 t 32579711  T

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Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 19879793 - 19879663
Alignment:
Q  101 cttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatc 200  Q
    ||||||||| | ||| |||| |||||||| |||||||||||||||||||| |||||| | ||||| ||||||||||| | |||||||||||||||| |||    
T  19879793 cttgatgaactcatcacagacatcctttcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaatttctaatc 19879694  T
Q  201 cttccttcgtcaaattgcaccttcatcgatc 231  Q
    || |||| | ||||||||| |||||||||||    
T  19879693 ctgccttagccaaattgcatcttcatcgatc 19879663  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 231
Target Start/End: Original strand, 19778721 - 19778861
Alignment:
Q  94 aatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatt 193  Q
    |||||| ||||||||| | ||| |||| ||||| || |||||||||||||||||||| |||||| | ||||| ||||||||||| | |||||||||||||    
T  19778721 aatcctccttgatgaactcatcacagacatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcttggaaaaccctaatt 19778820  T
Q  194 tctc---atccttccttcgtcaaattgcaccttcatcgatc 231  Q
    ||||   |||||||||||| |||| |||| ||||| |||||    
T  19778821 tctcatgatccttccttcgccaaactgcatcttcagcgatc 19778861  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 19721196 - 19721293
Alignment:
Q  117 cagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaa 214  Q
    |||||||||| || || |||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||  |||||| ||||    
T  19721196 cagaaatcctatcacgccttcctttcaaaactctgatgcaaatgaaatgtgtctgcaaatcattgaaaaccctaatctctgatcccgccttcgccaaa 19721293  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 19888660 - 19888557
Alignment:
Q  96 tccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttc 195  Q
    |||| ||||||||| | ||||  || ||||| || |||||||||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  19888660 tcctccttgatgaactcatcgtggatatcctgtcacgacttcctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 19888561  T
Q  196 tcat 199  Q
    ||||    
T  19888560 tcat 19888557  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 19357087 - 19357181
Alignment:
Q  134 cttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctc---atccttccttcgtcaaattgcaccttca 225  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||| |||||||   || ||||||||  |||||||||||||||    
T  19357087 cttcccgtcaaaactctgatgcaattcaaatgcgtttgcaaatcatggaaaacccttatttctcatgattcttccttcaccaaattgcaccttca 19357181  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 19351911 - 19351819
Alignment:
Q  134 cttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctc---atccttccttcgtcaaattgcacctt 223  Q
    ||||||||||||||||| |||||| | ||||| ||||| ||||||| || |||||| |||||||   |||||||||||  |||||||||||||    
T  19351911 cttcctgtcaaaactcttatgcaattcaaatgtgtttgtaaatcatggacaaccctgatttctcatgatccttccttcaccaaattgcacctt 19351819  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 22027812 - 22027943
Alignment:
Q  93 taatccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaat 192  Q
    ||||||||| ||| ||| ||||| ||||| | ||||||   ||||| |||||| ||||||| | | | || |||  ||| || |||| | |||||||| |    
T  22027812 taatccttcctgacgaacttatcacagaactgctttcttttcttcccgtcaaatctctgatccgattcaagtgctgttgtaagtcatgggaaaccctatt 22027911  T
Q  193 ttctcatccttccttcgtcaaattgcaccttc 224  Q
    |||| | |||||||||||||||||||||||||    
T  22027912 ttctgacccttccttcgtcaaattgcaccttc 22027943  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 14748518 - 14748621
Alignment:
Q  96 tccttcttgatgaatttatcgcagaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttc 195  Q
    |||| ||||||||| ||||||  ||| || | || ||||| |||||||||||||| |||||| | ||||| ||||||||||||| |||||||||||||||    
T  14748518 tcctccttgatgaacttatcgtggaattcttgtcacgactccctgtcaaaactcttatgcaattcaaatgtgtttgcaaatcatggaaaaccctaatttc 14748617  T
Q  196 tcat 199  Q
    ||||    
T  14748618 tcat 14748621  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 2910180 - 2910275
Alignment:
Q  119 gaaatcctttctcgacttcctgtcaaaactctgatgcaaatgaaatgcgtttgcaaatcattgaaaaccctaatttctcatccttccttcgtcaaa 214  Q
    |||||||| || || ||||| |||||| |||| || || ||||||| ||| || || |||| ||||||||||||||| |||||||| ||| |||||    
T  2910180 gaaatcctatcccgccttccagtcaaatctctaattcagatgaaatccgtatgtaagtcatggaaaaccctaatttcgcatccttcattcatcaaa 2910275  T

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