View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9488_low_38 (Length: 229)

Name: NF9488_low_38
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9488_low_38
NF9488_low_38
[»] chr3 (7 HSPs)
chr3 (174-229)||(53809406-53809461)
chr3 (174-229)||(47766864-47766919)
chr3 (183-229)||(7271513-7271559)
chr3 (188-229)||(10301742-10301783)
chr3 (178-225)||(10339906-10339953)
chr3 (71-101)||(53809303-53809333)
chr3 (188-229)||(48253081-48253122)
[»] chr4 (7 HSPs)
chr4 (174-229)||(26631129-26631184)
chr4 (174-229)||(46795939-46795994)
chr4 (174-229)||(56001182-56001237)
chr4 (174-229)||(36846470-36846525)
chr4 (174-229)||(47667326-47667381)
chr4 (174-229)||(3528338-3528393)
chr4 (188-229)||(41348387-41348428)
[»] chr8 (6 HSPs)
chr8 (174-229)||(38132-38187)
chr8 (174-229)||(31844519-31844574)
chr8 (174-229)||(39516410-39516465)
chr8 (188-229)||(22621061-22621102)
chr8 (174-223)||(24068472-24068521)
chr8 (188-229)||(43203204-43203245)
[»] chr7 (4 HSPs)
chr7 (174-229)||(28326303-28326358)
chr7 (174-229)||(41515144-41515199)
chr7 (174-229)||(17288155-17288210)
chr7 (174-229)||(43442673-43442728)
[»] chr1 (6 HSPs)
chr1 (188-229)||(26803143-26803184)
chr1 (174-229)||(40533514-40533569)
chr1 (188-229)||(24516482-24516523)
chr1 (188-229)||(40110579-40110620)
chr1 (197-229)||(12667208-12667240)
chr1 (201-229)||(52076682-52076710)
[»] chr6 (2 HSPs)
chr6 (188-229)||(18242234-18242275)
chr6 (197-229)||(11968400-11968432)
[»] chr5 (1 HSPs)
chr5 (176-229)||(4124908-4124961)
[»] chr2 (1 HSPs)
chr2 (188-229)||(25569917-25569958)


Alignment Details
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 53809406 - 53809461
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  53809406 ttaggtgctgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 53809461  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 47766864 - 47766919
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||| |||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  47766864 ttaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaa 47766919  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 7271513 - 7271559
Alignment:
Q  183 gacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||||||||| | ||||||||| |||||||||||||||||||||||    
T  7271513 gacgattcactataaaatacaatggacatgcaatcaaatggttaaaa 7271559  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 10301742 - 10301783
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  10301742 ttcactgttaaatacaatggacattcaatcaaatggttaaaa 10301783  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 10339906 - 10339953
Alignment:
Q  178 gtgccgacgattcactgttaaatacaatagacatgcaatcaaatggtt 225  Q
    |||| |||| |||||||||||||||||| ||||| |||||||||||||    
T  10339906 gtgctgacggttcactgttaaatacaatggacattcaatcaaatggtt 10339953  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 101
Target Start/End: Original strand, 53809303 - 53809333
Alignment:
Q  71 aagtttcaattagaagagatttaggtttttg 101  Q
    |||||||||||||||||||||||||||||||    
T  53809303 aagtttcaattagaagagatttaggtttttg 53809333  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 48253122 - 48253081
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||| ||| ||||||| |||||||||||||||||||||||    
T  48253122 ttcactattagatacaatggacatgcaatcaaatggttaaaa 48253081  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 26631129 - 26631184
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||| || |||||||||||||||||||||||||||||||||| |||||||||    
T  26631129 ttaggtgctgatgattcactgttaaatacaatagacatgcaatcaagtggttaaaa 26631184  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 46795939 - 46795994
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  46795939 ttaggtgccgacggttcactattaaatacaatggacatgcaatcaaatggttaaaa 46795994  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 56001182 - 56001237
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  56001182 ttaggtgccgacgattcactattagatacaatggacatgcaatcaaatggttaaaa 56001237  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 36846470 - 36846525
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||  |||| |||||||||||||| ||| |||||||||||||||||||||||    
T  36846470 ttaggtgttgacggttcactgttaaatataatggacatgcaatcaaatggttaaaa 36846525  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 47667381 - 47667326
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||| |||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  47667381 ttaggtgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaa 47667326  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 3528393 - 3528338
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||  |||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  3528393 ttaggtgttgacggttcactattagatacaatggacatgcaatcaaatggttaaaa 3528338  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 41348428 - 41348387
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||| |||||||||||| |||||||||||||||| ||||||    
T  41348428 ttcaccgttaaatacaatggacatgcaatcaaatgattaaaa 41348387  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 38187 - 38132
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||    
T  38187 ttaggtgctgacggttcactgttaaatacaatggacatgcaattaaatggttaaaa 38132  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 31844574 - 31844519
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||| || | ||||||||||| |||||||||||||||||||| |||||||||    
T  31844574 ttaggtgctgatggttcactgttaattacaatagacatgcaatcaagtggttaaaa 31844519  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 39516410 - 39516465
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||| ||| |||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  39516410 ttagatgctgacggttcactattagatacaatggacatgcaatcaaatggttaaaa 39516465  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 22621061 - 22621102
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||| |||||||||||| |||||||||||||||| ||||||    
T  22621061 ttcaccgttaaatacaatggacatgcaatcaaatgattaaaa 22621102  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 24068521 - 24068472
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatgg 223  Q
    |||||||| |||| |||||| ||| ||||||| |||||||||||||||||    
T  24068521 ttaggtgctgacggttcactattagatacaatggacatgcaatcaaatgg 24068472  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 43203204 - 43203245
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||| ||||||||||| |||||||||||||||| ||||||    
T  43203204 ttcacttttaaatacaatggacatgcaatcaaatgtttaaaa 43203245  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 28326303 - 28326358
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  28326303 ttaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaa 28326358  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 41515199 - 41515144
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||||    
T  41515199 ttaggtgccgacggttcactattaaatataatggacatgcaatcaaatggttaaaa 41515144  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 17288155 - 17288210
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||| |||| |||||| ||||||||||| ||||||||||||||| |||||||    
T  17288155 ttaggtgctgacggttcactattaaatacaatggacatgcaatcaaatagttaaaa 17288210  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 43442673 - 43442728
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||| |||| |||||||||||||||||  ||||||||||||||| |||||||    
T  43442673 ttaggtgctgacggttcactgttaaatacaacggacatgcaatcaaattgttaaaa 43442728  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 26803143 - 26803184
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  26803143 ttcactgttaaatacaatggacatgcaatcaaatggttaaaa 26803184  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 40533514 - 40533569
Alignment:
Q  174 ttaggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||||||||||| |||||| |||| |||||| ||||||||||| |||||||||||    
T  40533514 ttaggtgccgacggttcactattaattacaatggacatgcaatccaatggttaaaa 40533569  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 24516523 - 24516482
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  24516523 ttcaccgttaaatacaatggacatgcaatcaaatggttaaaa 24516482  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 40110579 - 40110620
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  40110579 ttcaccgttaaatacaatggacatgcaatcaaatggttaaaa 40110620  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 12667208 - 12667240
Alignment:
Q  197 aaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||||||||||||||||||||| ||||||    
T  12667208 aaatacaatagacatgcaatcaaatgattaaaa 12667240  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 229
Target Start/End: Complemental strand, 52076710 - 52076682
Alignment:
Q  201 acaatagacatgcaatcaaatggttaaaa 229  Q
    |||||||||||||||||||||||||||||    
T  52076710 acaatagacatgcaatcaaatggttaaaa 52076682  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 18242234 - 18242275
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||| | ||||||||| |||||||||||||||||||||||    
T  18242234 ttcactataaaatacaatggacatgcaatcaaatggttaaaa 18242275  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 11968400 - 11968432
Alignment:
Q  197 aaatacaatagacatgcaatcaaatggttaaaa 229  Q
    ||||| |||||||||||||||||||||||||||    
T  11968400 aaatataatagacatgcaatcaaatggttaaaa 11968432  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 4124961 - 4124908
Alignment:
Q  176 aggtgccgacgattcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||| |||| |||||| ||||||||||| || || |||||||||||||||||    
T  4124961 aggtgctgacggttcactattaaatacaatggatatacaatcaaatggttaaaa 4124908  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 25569958 - 25569917
Alignment:
Q  188 ttcactgttaaatacaatagacatgcaatcaaatggttaaaa 229  Q
    |||||| |||||||| |||||||||||||||| |||||||||    
T  25569958 ttcactcttaaatactatagacatgcaatcaagtggttaaaa 25569917  T

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