View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9488_low_4 (Length: 747)

Name: NF9488_low_4
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9488_low_4
NF9488_low_4
[»] scaffold0154 (2 HSPs)
scaffold0154 (272-730)||(10136-10592)
scaffold0154 (192-248)||(10620-10676)
[»] chr1 (3 HSPs)
chr1 (402-697)||(52166167-52166466)
chr1 (147-192)||(15911226-15911271)
chr1 (147-184)||(15910531-15910568)
[»] chr4 (7 HSPs)
chr4 (13-191)||(39096593-39096767)
chr4 (101-184)||(39095887-39095970)
chr4 (101-193)||(23176331-23176421)
chr4 (307-399)||(40270201-40270293)
chr4 (307-399)||(42573188-42573280)
chr4 (681-728)||(55207373-55207420)
chr4 (353-399)||(40270337-40270383)
[»] chr6 (3 HSPs)
chr6 (605-667)||(951092-951154)
chr6 (533-598)||(950342-950406)
chr6 (458-534)||(947103-947179)
[»] chr7 (3 HSPs)
chr7 (292-359)||(6641431-6641498)
chr7 (325-399)||(6638069-6638143)
chr7 (339-378)||(6641363-6641402)
[»] chr2 (3 HSPs)
chr2 (119-191)||(39439657-39439730)
chr2 (119-191)||(19814986-19815059)
chr2 (402-452)||(41782513-41782563)
[»] scaffold0122 (1 HSPs)
scaffold0122 (119-191)||(31304-31377)
[»] chr5 (4 HSPs)
chr5 (119-191)||(14188483-14188556)
chr5 (147-190)||(10569927-10569970)
chr5 (477-523)||(14760072-14760118)
chr5 (535-592)||(14767512-14767568)


Alignment Details
Target: scaffold0154 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 272 - 730
Target Start/End: Complemental strand, 10592 - 10136
Alignment:
Q  272 atcaactcattgaaagcaggtcacgcacaatctccaaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaacgccgtgatttcg 371  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||  ||    
T  10592 atcaactcattgaaagcag-tcacgcacgatctccaaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaacgccacaataccg 10494  T
Q  372 acaattcgttcaaaattgtacgacttcataagcaagaggctgagggcggggatttctttttctctcaaatcgaagaaaaaagagcaatttgtgtaggtga 471  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10493 acaattcgttcaaaattgtacgacttcagaagcaagaggctgagggcggggatttctttttctctcaaatcgaagaaaaaagagcaatttgtgtaggtga 10394  T
Q  472 agatagggttaacattcacaaagttgttcagtaggttattcgtgaacaaggagatgataatttagagatgttgtgttgcttgtttttgccaacaaacaaa 571  Q
    ||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10393 agatagggtcaacgttcacaaagctgttca-taggttattcgtgaacaaggagatgataatttatagatgttgtgttgcttgtttttgccaacaaacaaa 10295  T
Q  572 gatctttcaaatgcaatgaatactgcataacttgttcttgaagaacgatggtgttcctttcaagtgaatattgtaatagaggaatgattgttagaacttg 671  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||    
T  10294 gatctttcaaatggaatgaatactgcataacttgttcttgaagaacgatggtggtcctttaaagtgaatattgtaatagaggaatgattgttggaacttg 10195  T
Q  672 ttctgaaccatatataacacaactcatacctatattgatcattgttattgtaaaattgg 730  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10194 ttcagaaccatatataacacaactcatacctatattgatcattgttattgtaaaattgg 10136  T

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Target: scaffold0154; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 10676 - 10620
Alignment:
Q  192 ttttcacatacttgtttttctcgtgaaattactttcactatattgagcattatccat 248  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  10676 ttttcacattcttgtttttctcgtgaaattactttcgctatattgagcattatccat 10620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 3e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 402 - 697
Target Start/End: Complemental strand, 52166466 - 52166167
Alignment:
Q  402 agcaagaggctgagggcggggatttctttttctctcaaatcgaagaaaaaa-gagcaatttgtgtaggtgaagatagggttaacattcacaaagttgttc 500  Q
    ||||||||||||||||  ||||||||||| |||||||||||||| |||||| ||||||||||| |||||| ||||| ||||||| ||||| ||| |||||    
T  52166466 agcaagaggctgagggaagggatttctttctctctcaaatcgaataaaaaaagagcaatttgtctaggtgtagataaggttaacgttcacgaagctgttc 52166367  T
Q  501 agtaggttattcgtgaacaaggagatgataatttagagatgttgtgttgcttgtttttgccaacaaacaaagatctttcaaatgcaatgaat-------a 593  Q
    ||   |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||||||||||            
T  52166366 ag---gttattcgtgaagaaggagatgataatttagagatgttgtgttgctagtttttgctaacaaac-aagatcttccaaatgcaatgaatgctgcagc 52166271  T
Q  594 ctgcataacttgttcttgaagaacgatggtgttcctttcaagtgaatattgtaatagaggaatgattgttagaacttgttctgaaccatatataacacaa 693  Q
    ||||| |||| |||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  52166270 ctgcagaactcgttcttgaagaaggatgatgttcttttcaagtgaatattgtaataaaggaatgattgttagaacttgttctgaaccatatataacacaa 52166171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 192
Target Start/End: Original strand, 15911226 - 15911271
Alignment:
Q  147 gaaggagagagaaggagacaattttgaaggagatgatcaaattcct 192  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||    
T  15911226 gaaggagagagaaggagacaattttgaaggagaggatccaattcct 15911271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 15910568 - 15910531
Alignment:
Q  147 gaaggagagagaaggagacaattttgaaggagatgatc 184  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  15910568 gaaggagagagaatgagacaattttgaaggagaggatc 15910531  T

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Target: chr4 (Bit Score: 105; Significance: 5e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 39096593 - 39096767
Alignment:
Q  13 caaagggaagatgaagaagttcctgcagtagtaaaaccctcccagtttgtgatgttttaggttgtttatttatgnnnnnnnnnnataattttaatatgtc 112  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||           |||||||||||||||    
T  39096593 caaagggaagatgaagaagtttctgcagtagtaaaaccctccgagtttgtgatgttttaggttgtttatt-atgtttttttt---taattttaatatgtc 39096688  T
Q  113 taccgttagattcatctaatggctaatagtaagagaaggagagagaaggagacaattttgaaggagatgatcaaattcc 191  Q
    ||| |||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  39096689 tacagttagattcatctaatggctaatattaaaggaaggagagagaaggagacaattttgaaggagatgatccaattcc 39096767  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 39095970 - 39095887
Alignment:
Q  101 ttttaatatgtctaccgttagattcatctaatggctaatagtaagagaaggagagagaaggagacaattttgaaggagatgatc 184  Q
    ||||| |||||| |||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  39095970 ttttattatgtccaccgttggattcatctaatggataatattaagggaaggagagagaaggagacaattttgaaggagaggatc 39095887  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 23176421 - 23176331
Alignment:
Q  101 ttttaatatgtctaccgttagattcatctaatggctaatagtaagagaaggagagagaaggagacaattttgaaggagatgatcaaattcctt 193  Q
    ||||| |||||| ||||||||||||||||||||| ||||| |||||  ||||||||||||||||||||||||||||||| ||||  |||||||    
T  23176421 ttttattatgtccaccgttagattcatctaatggataatattaaga--aggagagagaaggagacaattttgaaggagaggatctgattcctt 23176331  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 40270201 - 40270293
Alignment:
Q  307 aaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaacgccgtgatttcgacaattcgttcaaaattgtacgacttca 399  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||  |||||| ||||||| ||||||  ||||||||||||    
T  40270201 aaacatgttgctgagaacgactctgcaaatacaaaaatttgtttaataaaaacaccacgatttctacaattccttcaaagatgtacgacttca 40270293  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 307 - 399
Target Start/End: Original strand, 42573188 - 42573280
Alignment:
Q  307 aaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaacgccgtgatttcgacaattcgttcaaaattgtacgacttca 399  Q
    |||| ||||| ||||| ||||||||||||||||||||| |||||||||| ||| | | |||||||||||||| ||||||  ||||||||||||    
T  42573188 aaacatgttgatgagagcgactctgcaaatacaaaaatatgtttaataaaaacactgcgatttcgacaattccttcaaagatgtacgacttca 42573280  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 681 - 728
Target Start/End: Original strand, 55207373 - 55207420
Alignment:
Q  681 atatataacacaactcatacctatattgatcattgttattgtaaaatt 728  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  55207373 atatataacacaactcacacctatattgatcattgttattgtaaaatt 55207420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 353 - 399
Target Start/End: Original strand, 40270337 - 40270383
Alignment:
Q  353 taacaacgccgtgatttcgacaattcgttcaaaattgtacgacttca 399  Q
    ||||||||||| ||||||||||| ||||||||| |||||| ||||||    
T  40270337 taacaacgccgcgatttcgacaactcgttcaaagttgtacaacttca 40270383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 605 - 667
Target Start/End: Original strand, 951092 - 951154
Alignment:
Q  605 gttcttgaagaacgatggtgttcctttcaagtgaatattgtaatagaggaatgattgttagaa 667  Q
    |||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||    
T  951092 gttcttgaagaaggatgcttttcctttcaagtgaatattgtaatagaggaatgattgttagaa 951154  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 533 - 598
Target Start/End: Original strand, 950342 - 950406
Alignment:
Q  533 ttagagatgttgtgttgcttgtttttgccaacaaacaaagatctttcaaatgcaatgaatactgca 598  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||| |||||||||||||| |||||    
T  950342 ttagagatgctgttttgcttgtttttgccaacaaac-aagatcttccaaatgcaatgaatgctgca 950406  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 458 - 534
Target Start/End: Original strand, 947103 - 947179
Alignment:
Q  458 atttgtgtaggtgaagatagggttaacattcacaaagttgttcagtaggttattcgtgaacaaggagatgataattt 534  Q
    ||||||||||||||| || |||||||| ||||| ||| ||||||||||||| || | ||| |||||||||| |||||    
T  947103 atttgtgtaggtgaaaatggggttaacgttcacgaagctgttcagtaggttgtttgcgaagaaggagatgagaattt 947179  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 6641498 - 6641431
Alignment:
Q  292 tcacgcacaatctccaaacctgttgctgagaacgactctgcaaatacaaaaatctgtttaataacaac 359  Q
    |||| ||| |||| ||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||    
T  6641498 tcacacaccatcttcaaacctgttgctgagaacaactctgcaactacaaaaatatgtttaataacaac 6641431  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 399
Target Start/End: Complemental strand, 6638143 - 6638069
Alignment:
Q  325 gactctgcaaatacaaaaatctgtttaataacaacgccgtgatttcgacaattcgttcaaaattgtacgacttca 399  Q
    ||||||||||||||||||||||||||||||| |||  || |||||||| ||||| ||||||  |||| |||||||    
T  6638143 gactctgcaaatacaaaaatctgtttaataaaaacagcgcgatttcgataattccttcaaagatgtaagacttca 6638069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 339 - 378
Target Start/End: Complemental strand, 6641402 - 6641363
Alignment:
Q  339 aaaaatctgtttaataacaacgccgtgatttcgacaattc 378  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  6641402 aaaaatctgtttaataacaacaccgtgatttcgacaattc 6641363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 39439657 - 39439730
Alignment:
Q  119 tagattcatctaatggctaatagtaagagaaggagagagaaggagac-aattttgaaggagatgatcaaattcc 191  Q
    ||||| |||||||||||||||| |||| |||| |||||||||||||| |||||||||||||| |||| ||||||    
T  39439657 tagatccatctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagaggatccaattcc 39439730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 19814986 - 19815059
Alignment:
Q  119 tagattcatctaatggctaatagtaagagaaggagagagaaggaga-caattttgaaggagatgatcaaattcc 191  Q
    ||||| |||||||||||||||| |||| |||| |||||||||||||  |||||||||||||| |||| ||||||    
T  19814986 tagatccatctaatggctaatattaagtgaagaagagagaaggagataaattttgaaggagaggatccaattcc 19815059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 402 - 452
Target Start/End: Complemental strand, 41782563 - 41782513
Alignment:
Q  402 agcaagaggctgagggcggggatttctttttctctcaaatcgaagaaaaaa 452  Q
    ||||||||||||||||  ||||||||||| |||||||||||||| ||||||    
T  41782563 agcaagaggctgagggaagggatttctttctctctcaaatcgaataaaaaa 41782513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 31304 - 31377
Alignment:
Q  119 tagattcatctaatggctaatagtaagagaaggagagagaaggagac-aattttgaaggagatgatcaaattcc 191  Q
    ||||| || ||||||||||||| |||| |||| |||||||||||||| |||||||||||||| |||| ||||||    
T  31304 tagatccacctaatggctaatattaagtgaagaagagagaaggagacaaattttgaaggagaggatccaattcc 31377  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 14188483 - 14188556
Alignment:
Q  119 tagattcatctaatggctaatagtaagagaaggagagagaaggagac-aattttgaaggagatgatcaaattcc 191  Q
    ||||| |||||||||||||||| |||| |||| ||||| |||||||| |||||||||||| | |||| ||||||    
T  14188483 tagatccatctaatggctaatattaagtgaagaagagaaaaggagacaaattttgaaggaaaggatccaattcc 14188556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 190
Target Start/End: Complemental strand, 10569970 - 10569927
Alignment:
Q  147 gaaggagagagaaggagacaattttgaaggagatgatcaaattc 190  Q
    ||||||||||||| ||||||||||||||||||| |||| |||||    
T  10569970 gaaggagagagaatgagacaattttgaaggagaggatccaattc 10569927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 477 - 523
Target Start/End: Original strand, 14760072 - 14760118
Alignment:
Q  477 gggttaacattcacaaagttgttcagtaggttattcgtgaacaagga 523  Q
    |||||||||||||||||| |||||||| ||||||||| ||| |||||    
T  14760072 gggttaacattcacaaagctgttcagtcggttattcgcgaagaagga 14760118  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 535 - 592
Target Start/End: Original strand, 14767512 - 14767568
Alignment:
Q  535 agagatgttgtgttgcttgtttttgccaacaaacaaagatctttcaaatgcaatgaat 592  Q
    |||||||  ||||||||||| ||||||||||||| |||||||| | ||||||||||||    
T  14767512 agagatgcagtgttgcttgtgtttgccaacaaac-aagatcttcccaatgcaatgaat 14767568  T

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