View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_5 (Length: 520)
Name: NF9488_low_5
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 298
Target Start/End: Original strand, 14665094 - 14665378
Alignment:
| Q |
15 |
aaatagcatatagcatttgattatagaatatcgcgaatacacgtaagaatatcattgaaaatgaagaaactatctaaaaataaggccgcccttgctaaca |
114 |
Q |
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| T |
14665094 |
aaatagcatatagcatttgattatagaatatcgtgaatacacataagaatatcattgaaaatgcagaagctagctaaaaataaggccgcccttgctaaca |
14665193 |
T |
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| Q |
115 |
c--gagcaacgtcattgacttttctccttataagctcaatcttagattttataacggacaagattatatcttcgggctcggataacatcactaagatccg |
212 |
Q |
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| T |
14665194 |
catgagcaacgtcattgacttttctccttataagctcaatcatagattttacaacggacaagattatatcttcgggctcgg-taacatcactaagatccg |
14665292 |
T |
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| Q |
213 |
acacctctagactcttgctgtggaattgatcaaccacgcactttgaatccacattctcaagctgcaaaatcttttatatgtcaata |
298 |
Q |
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| T |
14665293 |
acacctctagactcttactgtggaattgatcaaccacgcactttgaatccacattctcaagctgcaaaatcttttatatgtcaata |
14665378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 379 - 510
Target Start/End: Original strand, 14665378 - 14665509
Alignment:
| Q |
379 |
aattggggttaacttgctgcttcgaacttctgcccagtgttgcagcagtcctttgacgccttactgtttgagagcacatgcagacacagtagcagatgtc |
478 |
Q |
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| T |
14665378 |
aattggggttaacttgctgctgcgaacttctgcccagtgttgcagcagtcctttgacgccttactgtttgagagcacatgcagacacagtagcagatgtc |
14665477 |
T |
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| Q |
479 |
tctacattataccaaatcttgttgttcctttg |
510 |
Q |
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| T |
14665478 |
tctacattataccaaatcttgttgttcctttg |
14665509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 14668331 - 14668435
Alignment:
| Q |
159 |
ttttataacggacaagattatatcttcgggctcggataacatcactaagatccgacacctctagactcttgctgtggaattgatcaaccacgcactttga |
258 |
Q |
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||||| ||||||||||| ||| ||| ||| ||||||||| |||||| |||||||||||| ||||||| || |||||||||| |||||||||||||||||| |
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| T |
14668331 |
ttttacaacggacaagaatatctctacggtctcggataatatcacttagatccgacacccctagacttttactgtggaatttatcaaccacgcactttga |
14668430 |
T |
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| Q |
259 |
atcca |
263 |
Q |
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||||| |
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| T |
14668431 |
atcca |
14668435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 14702867 - 14702763
Alignment:
| Q |
159 |
ttttataacggacaagattatatcttcgggctcggataacatcactaagatccgacacctctagactcttgctgtggaattgatcaaccacgcactttga |
258 |
Q |
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| T |
14702867 |
ttttacaacggactagattatatcatcagtcttggataatatcactatgatccgacacccctagactcttactgtggagtttatcaaccgcacactttga |
14702768 |
T |
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| Q |
259 |
atcca |
263 |
Q |
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||||| |
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| T |
14702767 |
atcca |
14702763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 14653014 - 14653093
Alignment:
| Q |
288 |
atatgtcaataccaacctggttgtgaagcttcgaagaggctgcatccatattgcatttgtagcgtcctagatgaggtttt |
367 |
Q |
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| T |
14653014 |
atatgtcagtaccaaccttgttgtgaagctccaataaggctgcatacacattgcatttgtagcgtcctagatgaggtttt |
14653093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 14662805 - 14662884
Alignment:
| Q |
288 |
atatgtcaataccaacctggttgtgaagcttcgaagaggctgcatccatattgcatttgtagcgtcctagatgaggtttt |
367 |
Q |
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| T |
14662805 |
atatgtcagtaccaaccttgttgtgaagctccaataaggctgcatacacattgcatttgtagcgtcctagatgaggtttt |
14662884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 14707548 - 14707436
Alignment:
| Q |
96 |
aaggccgcccttgctaacac----gagcaacgtcattgacttttctccttataagctcaatcttagattttataacggacaagattatatcttcgggctc |
191 |
Q |
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|||||||||||||||||||| ||||||| ||||||| |||||| |||| |||||||||| ||||| ||||||||||||||| ||| ||| ||| |
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| T |
14707548 |
aaggccgcccttgctaacacttatgagcaacccttttgacttgtctcctaataaactcaatcttaatttttacaacggacaagattatctctacggtctc |
14707449 |
T |
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| Q |
192 |
ggataacatcact |
204 |
Q |
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|||||| |||||| |
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| T |
14707448 |
ggataatatcact |
14707436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 14687985 - 14687940
Alignment:
| Q |
307 |
gttgtgaagcttcgaagaggctgcatccatattgcatttgtagcgt |
352 |
Q |
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||||||||||| |||| ||||||||| || |||||||||||||||| |
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| T |
14687985 |
gttgtgaagctccgaaaaggctgcattcacattgcatttgtagcgt |
14687940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 96 - 263
Target Start/End: Complemental strand, 30732935 - 30732764
Alignment:
| Q |
96 |
aaggccgcccttgctaacac----gagcaacgtcattgacttttctccttataagctcaatcttagattttataacggacaagattatatcttcgggctc |
191 |
Q |
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|||||||||||||||||||| ||||||| ||||||| |||||| |||| |||| ||| ||||| |||||| |||||||| ||| ||| ||| |
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| T |
30732935 |
aaggccgcccttgctaacacttatgagcaacccttttgacttgtctcctaataaactcatctttaatttttacaacggataagattatctctacggtctc |
30732836 |
T |
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| Q |
192 |
ggataacatcactaagatccgacacctctagactcttgctgtggaattgatcaaccacgcactttgaatcca |
263 |
Q |
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|||||| | |||| |||||||||||| ||||||| || |||||||||| ||||||||||||||||||||||| |
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| T |
30732835 |
ggataataccacttagatccgacacccctagacttttactgtggaatttatcaaccacgcactttgaatcca |
30732764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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