View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9488_low_6 (Length: 518)

Name: NF9488_low_6
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9488_low_6
NF9488_low_6
[»] chr5 (21 HSPs)
chr5 (22-503)||(13855611-13856080)
chr5 (22-341)||(10209773-10210090)
chr5 (34-332)||(12104608-12104903)
chr5 (22-341)||(10109027-10109365)
chr5 (22-174)||(10105801-10105952)
chr5 (128-306)||(10215984-10216160)
chr5 (22-174)||(10212324-10212475)
chr5 (185-341)||(10105596-10105750)
chr5 (382-477)||(10108843-10108937)
chr5 (22-163)||(12109390-12109531)
chr5 (22-175)||(10102715-10102868)
chr5 (23-175)||(9674763-9674918)
chr5 (185-329)||(9660489-9660631)
chr5 (185-341)||(10212527-10212681)
chr5 (185-311)||(12109599-12109723)
chr5 (22-123)||(9660279-9660380)
chr5 (382-462)||(10210184-10210263)
chr5 (31-83)||(37278735-37278787)
chr5 (212-312)||(9674994-9675091)
chr5 (22-85)||(10215923-10215986)
chr5 (27-81)||(3467667-3467721)
[»] chr8 (5 HSPs)
chr8 (22-120)||(31558254-31558352)
chr8 (22-83)||(31555169-31555230)
chr8 (22-83)||(31878239-31878300)
chr8 (32-85)||(13568429-13568482)
chr8 (28-81)||(4042245-4042298)
[»] chr1 (12 HSPs)
chr1 (22-160)||(10542318-10542456)
chr1 (20-83)||(43014364-43014427)
chr1 (23-83)||(45316452-45316512)
chr1 (23-89)||(42202430-42202496)
chr1 (23-89)||(42211298-42211364)
chr1 (23-89)||(42217273-42217339)
chr1 (23-89)||(42409594-42409660)
chr1 (23-83)||(45151996-45152056)
chr1 (23-89)||(2176357-2176423)
chr1 (27-83)||(42417644-42417700)
chr1 (29-79)||(51795024-51795074)
chr1 (262-341)||(10542173-10542252)
[»] chr3 (3 HSPs)
chr3 (23-89)||(46446211-46446277)
chr3 (22-83)||(21884096-21884157)
chr3 (34-86)||(35717255-35717307)
[»] chr4 (6 HSPs)
chr4 (22-83)||(17889425-17889486)
chr4 (22-89)||(25698805-25698872)
chr4 (22-79)||(49588194-49588251)
chr4 (22-73)||(36790848-36790899)
chr4 (32-71)||(20918686-20918725)
chr4 (27-78)||(46362544-46362595)
[»] chr7 (7 HSPs)
chr7 (23-83)||(3647029-3647089)
chr7 (23-77)||(3649484-3649538)
chr7 (23-77)||(3657601-3657655)
chr7 (28-81)||(3641211-3641264)
chr7 (23-123)||(3645021-3645119)
chr7 (22-69)||(19523283-19523330)
chr7 (48-76)||(22315926-22315954)
[»] chr6 (2 HSPs)
chr6 (21-79)||(33891599-33891657)
chr6 (31-83)||(27868671-27868723)
[»] chr2 (4 HSPs)
chr2 (22-86)||(26568338-26568402)
chr2 (22-79)||(5900532-5900589)
chr2 (22-74)||(43633443-43633495)
chr2 (31-67)||(2341338-2341374)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 22 - 503
Target Start/End: Complemental strand, 13856080 - 13855611
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||    
T  13856080 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcactcggctccgtgcttgtaagaggtagaggtcctttctttttatatgt 13855981  T
Q  122 gaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctccttgacacatttat 221  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |  ||||||||||||||||||||||    ||||||||||||||    
T  13855980 gaactgcatagtttagttt-atgaattggttgatgtgggactctatcagacacccacctattctcacatatttcccctattc----cttgacacatttat 13855886  T
Q  222 ttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccattccatgaagct 321  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13855885 ttgaaatgtttaatctttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccattcaatgaagct 13855786  T
Q  322 tttcttccaaaagaaagagagacaagagtgagaggatttgatccctattatgtatatgagatatccttaacaaaatacttaacagtattaacaaggcatg 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||    
T  13855785 tttcttccaaaagaaagagagacaagagtgagaggatttgatccctattat-------atatatccttaacaaaatacttaacagtattaacaaggcatg 13855693  T
Q  422 aaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatcnnnnnnncccttaagttggtcctttg 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  13855692 aaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatctttttttcccttaagttggtcctttg 13855611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 22 - 341
Target Start/End: Original strand, 10209773 - 10210090
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||| |   | ||||||| ||||||||||||     
T  10209773 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgttcatcacacggctccgtgattttaacaaggataggtcctatctttttatatgc 10209872  T
Q  122 gaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctccttgacacatttat 221  Q
     | |||||||||||||||| ||||||||| |||||||||||| ||| |||||| || | ||  ||| || |||||||| ||| |||||| ||||||||||    
T  10209873 aagctgcatagtttagttt-atgaattgggcgatgtgggactttattagacactcacctgtagtcatatgtttcccctgttcactccttcacacatttat 10209971  T
Q  222 ttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccattccatgaagct 321  Q
    ||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||| ||| |||||||| |||||||||||| |||||  |||||||    
T  10209972 ttgaaatgtttaatc-ttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaacatctcaaagctagaacattaaacattcattgaagct 10210070  T
Q  322 tttcttccaaaagaaagaga 341  Q
    ||||||| ||||||||||||    
T  10210071 tttcttctaaaagaaagaga 10210090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 34 - 332
Target Start/End: Original strand, 12104608 - 12104903
Alignment:
Q  34 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgtgaactgcatagt 133  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||||| ||||||||||||||| ||||||| |    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttacaagaagtagaggtcctatctttttatatgtgagctgcataat 12104707  T
Q  134 ttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctccttgacacatttatttgaaatgttta 233  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||| | |||||||||| |||||||||||  ||| |  |||||  |||||||||| ||||    
T  12104708 ttag-tttatgaattggtcgatgtgggactttattagacacccacctgttctcacatgtttcccctatttactcatccacacacctatttgaaatattta 12104806  T
Q  234 atccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccattccatgaagcttttcttccaaa 332  Q
    || ||||||||||  |||||||| ||||||||||| ||||||||||| ||||||||||||  ||||||||||| ||| |  ||||||||| ||||||||    
T  12104807 at-cttttctcttcaatttcatgtgtttaaaatca-tttagttttctacaatatctcaaagttagaacattaaacatccactgaagctttccttccaaa 12104903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 22 - 341
Target Start/End: Complemental strand, 10109365 - 10109027
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  | | |   |||||| || ||||||||||||     
T  10109365 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgatctttacaaggagaggttctatctttttatatgc 10109266  T
Q  122 gaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacac---------------------ccaacggttctcacatatttccccta 200  Q
     | |||||||||||||||| ||||||||| |||||||||||| ||||||||||                     ||| | |||||||||| |||||||||    
T  10109265 aagctgcatagtttagttt-atgaattgggcgatgtgggactttatcagacacgcacctgttctcacatgtcacccacccgttctcacatgtttccccta 10109167  T
Q  201 ttcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaa 300  Q
    | | |||||| ||||||||||||||||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  10109166 tccactccttcacacatttatttgaaatgtttaatc-ttttctcttcaatttcatgtgtttaaaatcattttagttttctgcaacatctcaaaactagaa 10109068  T
Q  301 cattaaccattccatgaagcttttcttccaaaagaaagaga 341  Q
    ||||||  ||||  |||| ||||||||| ||||||||||||    
T  10109067 cattaaatattcattgaaacttttcttctaaaagaaagaga 10109027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 10105952 - 10105801
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  || |  ||||| ||||||| |||||||||     
T  10105952 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttaaaaaaagtagagatcctttcattttatatga 10105853  T
Q  122 gaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacac 174  Q
     | ||||||||||||| |||||||| ||| |||||||||||| | ||||||||    
T  10105852 aagctgcatagtttag-tttatgaactgggcgatgtgggactttgtcagacac 10105801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 128 - 306
Target Start/End: Original strand, 10215984 - 10216160
Alignment:
Q  128 catagtttagttttatgaattggtcgatgtgggactctatcagacacccaacggttctcacatatttcccctattcgctccttgacacatttatttgaaa 227  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||||||   |||||||||| |||| ||||||  ||| |  ||||||||||||||||    
T  10215984 catagtttagtttc-tgaattggtcgatgtgggactttatcagacacccacatgttctcacatgtttcacctatttactcatccacacatttatttgaaa 10216082  T
Q  228 tgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaa 306  Q
     ||||||| ||||||||||  |||||||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||    
T  10216083 ggtttaat-cttttctcttcaatttcatgtgtttaaaatcattttagttttcttcaatatctgaaagctagagcattaa 10216160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 10212324 - 10212475
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgt 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |  ||| |||||||| |||| ||||||||||    
T  10212324 cacacagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtacctattggaggtagaggtcatttcattttatatgt 10212423  T
Q  122 gaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacac 174  Q
    || | ||||||||||| |||||| |||||| ||||||||||  ||||||||||    
T  10212424 gatcagcatagtttag-tttatgcattggtagatgtgggacattatcagacac 10212475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 185 - 341
Target Start/End: Complemental strand, 10105750 - 10105596
Alignment:
Q  185 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 284  Q
    |||||| |||||||||||| ||| |  ||| ||||||||||||||||||||| |||||||||  |||||||  |||| ||||||| | |||||||| |||    
T  10105750 tcacatctttcccctattcactcatccacatatttatttgaaatgtttaatc-ttttctcttcaatttcatatgttttaaatcatat-agttttcttcaa 10105653  T
Q  285 tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 341  Q
    ||||||||| |||||||||||| |||||  |||||||||||||||||||||||||||    
T  10105652 tatctcaaagctagaacattaaacattcattgaagcttttcttccaaaagaaagaga 10105596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 10108937 - 10108843
Alignment:
Q  382 atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaagagacttcggattaatc 477  Q
    |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||    
T  10108937 atatccttaataaaatactta-cagtattaacaaggcatgaatttacagtaaggagctacagttgtcagtttgcagtaagagacttcggattaatc 10108843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 12109390 - 12109531
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgt 121  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| ||||| |  ||| |||||||| |||| |||||||| |    
T  12109390 cacacggtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatcaggcggctccgtgcttattggaggtagaggtcatttcattttatatat 12109489  T
Q  122 gaactgcatagtttagttttatgaattggtcgatgtgggact 163  Q
    ||   || ||||||   |||||| ||||||||||||||||||    
T  12109490 gagaagcttagtttcagtttatgcattggtcgatgtgggact 12109531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 10102868 - 10102715
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccat-gcttgtaagagatagaggtcctttctttttatatg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |   || ||| |    |||||| |||| ||||||| |    
T  10102868 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacagctccgtaaattttaacaagctgaggtcttttcgttttataag 10102769  T
Q  121 tgaactgcatagtttagttttatgaattggtcgatgtgggactctatcagacacc 175  Q
    | | | ||||||||||| ||||||||||||||||||||||| | |||| ||||||    
T  10102768 taagcagcatagtttag-tttatgaattggtcgatgtgggagtttatccgacacc 10102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 175
Target Start/End: Original strand, 9674763 - 9674918
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcaca---cggctccatgcttgtaagagatagaggtcctttctttttatat 119  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||   ||||||| |||||  || || ||||||| ||||  ||||||||    
T  9674763 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacggcggctccgtgctttaaaaaggtagaggttctttaattttatat 9674862  T
Q  120 gtgaactgcatagtttagttttatgaattggtcgatgtgggactcta-tcagacacc 175  Q
    |||| | |||||||||||  ||||| |||||  ||||||||||| || |||||||||    
T  9674863 gtgagcagcatagtttag-cttatgcattggaggatgtgggactttagtcagacacc 9674918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 329
Target Start/End: Original strand, 9660489 - 9660631
Alignment:
Q  185 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 284  Q
    |||||| ||||||| |||| ||| |  |||||||||||||||| |||||||| ||||||||| ||||||||  |||||||||||||| |||||||| |||    
T  9660489 tcacatctttcccccattcactcatccacacatttatttgaaaggtttaatc-ttttctcttcgatttcatatgtttaaaatcattt-agttttcttcaa 9660586  T
Q  285 tatctcaaaactagaacattaaccattccatgaagcttttcttcc 329  Q
    |||||| || |||||||||||| |||||  |||||| || |||||    
T  9660587 tatctctaagctagaacattaaacattcattgaagcattccttcc 9660631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 185 - 341
Target Start/End: Original strand, 10212527 - 10212681
Alignment:
Q  185 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 284  Q
    |||||| |||||||||||| ||| |  |||||||||||  ||| | |||||||||| ||||   |||||||| |||||||||||| | |||||||| |||    
T  10212527 tcacatctttcccctattcactcatccacacatttattcaaaaggattaatccttt-ctctccaatttcatgtgtttaaaatcatct-agttttcttcaa 10212624  T
Q  285 tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 341  Q
     |||||||| |||||| ||||| |||||  |||||||||||||||||||||||||||    
T  10212625 catctcaaagctagaatattaatcattcattgaagcttttcttccaaaagaaagaga 10212681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 12109599 - 12109723
Alignment:
Q  185 tcacatatttcccctattcgctccttgacacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaa 284  Q
    |||||| |||||||||||| ||| |  || ||||||||||||| |||||||| |||||||||  |||||||  |||||||||||||| |||||||| |||    
T  12109599 tcacatctttcccctattcactcatccacgcatttatttgaaaggtttaatc-ttttctcttcaatttcatatgtttaaaatcattt-agttttcttcaa 12109696  T
Q  285 tatctcaaaactagaacattaaccatt 311  Q
    |||||| || |||||||||||| ||||    
T  12109697 tatctctaagctagaacattaaacatt 12109723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 9660279 - 9660380
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgt 121  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||   |  ||||| |||||| |  ||||||||||||||    
T  9660279 cacacagtattctttagtaaaaggcaaaataatagttcgctatgtgatcatcacaaggctccatctctaaaagaggtagaggccaattctttttatatgt 9660378  T
Q  122 ga 123  Q
    ||    
T  9660379 ga 9660380  T

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Target: chr5; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 462
Target Start/End: Original strand, 10210184 - 10210263
Alignment:
Q  382 atatccttaacaaaatacttaacagtattaacaaggcatgaaattacagtaaggagctacagtttttagtgtgcagtaaga 462  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||||||| |||||    
T  10210184 atatccttaataaaatactta-cagtattaacaagacatgaaattacagtaaggggctacaatgtttagtgtgcaataaga 10210263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 37278735 - 37278787
Alignment:
Q  31 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctcc 37278787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 312
Target Start/End: Original strand, 9674994 - 9675091
Alignment:
Q  212 acacatttatttgaaatgtttaatccttttctctttgatttcatgcgtttaaaatcattttagttttctgcaatatctcaaaactagaacattaaccatt 311  Q
    ||||||||||||||||||||||||| |||||||||  || ||||  ||||||| |||||| ||||||||   |||||||||| |||||||||||||||||    
T  9674994 acacatttatttgaaatgtttaatc-ttttctcttcaatatcatatgtttaaa-tcattt-agttttctttgatatctcaaagctagaacattaaccatt 9675090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 10215923 - 10215986
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccat 85  Q
    |||| |||||||||||||||||||| |||||||||||  ||||||||||| ||||| |||||||    
T  10215923 cacaaggtattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacacagctccat 10215986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 3467667 - 3467721
Alignment:
Q  27 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 81  Q
    |||||||||||||||||||||||||||||||| ||| || | |||||||||||||    
T  3467667 ggtattctttagtaaaaggcgaaagaatagtttgctttgagctcatcacacggct 3467721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 31558254 - 31558352
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| || |||||  ||||||||    
T  31558254 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttataaaaggtagaagtgctttcagtttatatg 31558352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 31555169 - 31555230
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31555169 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 31555230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 31878300 - 31878239
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31878300 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 31878239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 13568429 - 13568482
Alignment:
Q  32 tctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccat 85  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacggttccat 13568482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 4042245 - 4042298
Alignment:
Q  28 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 81  Q
    |||||||||||| |||||||||||||||||| ||| || | |||||||||||||    
T  4042245 gtattctttagtcaaaggcgaaagaatagtttgctttgagctcatcacacggct 4042298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 10542456 - 10542318
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgc-ttgtaagagatagaggtcctttctttttatatg 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||  | |||| |||||||| |||||||||    
T  10542456 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgctttataactgttagatgtcctttcattttatatg 10542357  T
Q  121 tgaactgcatagtttagttttatgaattggtcgatgtggg 160  Q
    ||| | || ||||| || || ||| ||| |||||||||||    
T  10542356 tgagcagcttagttaag-ttgatgtattagtcgatgtggg 10542318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 43014364 - 43014427
Alignment:
Q  20 cacacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43014364 cacacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 43014427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 45316452 - 45316512
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45316452 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggctcc 45316512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 42202430 - 42202496
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgctt 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  42202430 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctccgtgctt 42202496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 42211298 - 42211364
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgctt 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  42211298 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctccgtgctt 42211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 42217273 - 42217339
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgctt 89  Q
    |||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  42217273 acacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatgctt 42217339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 42409660 - 42409594
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgctt 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||    
T  42409660 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacagctccgtgctt 42409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 45152056 - 45151996
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  45152056 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacggctcc 45151996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 2176357 - 2176423
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgctt 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |||||    
T  2176357 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacgtctccgtgctt 2176423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 42417700 - 42417644
Alignment:
Q  27 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  42417700 ggtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacacagctcc 42417644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 51795074 - 51795024
Alignment:
Q  29 tattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacgg 79  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  51795074 tattctttagtaaaaggcgaaacaatagtttgctatgtcatcatcacacgg 51795024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 341
Target Start/End: Complemental strand, 10542252 - 10542173
Alignment:
Q  262 aaaatcattttagttttctgcaa-tatctcaaaactagaacattaaccattccatgaagcttttcttccaaaagaaagaga 341  Q
    ||||||||||||| ||||| ||| |||||||||  ||||| ||||| |||||| ||||||||| ||||| |||||||||||    
T  10542252 aaaatcattttagatttcttcaaatatctcaaagttagaagattaaacattccttgaagctttgcttcc-aaagaaagaga 10542173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 46446277 - 46446211
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgctt 89  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  46446277 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacaaggctccatgctt 46446211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 21884096 - 21884157
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21884096 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 21884157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 35717255 - 35717307
Alignment:
Q  34 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 86  Q
    ||||||||||| ||||| ||||||| |||||||| ||||||||||||| ||||    
T  35717255 tttagtaaaagacgaaataatagtttgctatgtgctcatcacacggcttcatg 35717307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 17889486 - 17889425
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17889486 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctcc 17889425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 25698872 - 25698805
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgctt 89  Q
    |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||| ||||| |||||    
T  25698872 cacacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcacacagctccgtgctt 25698805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 49588194 - 49588251
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacgg 79  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||    
T  49588194 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacgg 49588251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 36790899 - 36790848
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatc 73  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  36790899 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgctcatc 36790848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 20918725 - 20918686
Alignment:
Q  32 tctttagtaaaaggcgaaagaatagttcgctatgtgatca 71  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtgatca 20918686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 46362544 - 46362595
Alignment:
Q  27 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacg 78  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||| |||||    
T  46362544 ggtattctttagtaaaaagcgaaataatagttcgctatgtcatcattacacg 46362595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 3647089 - 3647029
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  3647089 acacggtattctttagtaaaaggcgaaagaatagtttgctatgtcatcatcacacggctcc 3647029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 3649538 - 3649484
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacac 77  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3649538 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 3649484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 3657655 - 3657601
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacac 77  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3657655 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 3641264 - 3641211
Alignment:
Q  28 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggct 81  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3641264 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggct 3641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 3645119 - 3645021
Alignment:
Q  23 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttgtaagagatagaggtcctttctttttatatgtg 122  Q
    ||||||||||||||| |||||||| |||||||| ||| |  ||| ||||| ||| |||||| || || | |||| ||||||||||||  |||||||||||    
T  3645119 acacggtattctttaataaaaggcaaaagaataattcac--tgtcatcattacaaggctccctggttttgagaggtagaggtcctttgcttttatatgtg 3645022  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 19523283 - 19523330
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgat 69  Q
    ||||||| |||||||||||||||||||||||||  |||||| ||||||    
T  19523283 cacacggaattctttagtaaaaggcgaaagaattattcgctctgtgat 19523330  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 22315954 - 22315926
Alignment:
Q  48 aaagaatagttcgctatgtgatcatcaca 76  Q
    |||||||||||||||||||||||||||||    
T  22315954 aaagaatagttcgctatgtgatcatcaca 22315926  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 33891657 - 33891599
Alignment:
Q  21 acacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacgg 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  33891657 acacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgcttatcacacgg 33891599  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 27868671 - 27868723
Alignment:
Q  31 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctcc 83  Q
    ||||| |||||||| ||||| ||||||| ||||||||||||| ||||||||||    
T  27868671 ttcttaagtaaaagacgaaacaatagtttgctatgtgatcattacacggctcc 27868723  T

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Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 26568402 - 26568338
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatg 86  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||    
T  26568402 cacacggtattctttagtaaaaggcaaaagaatagttcgctatgtgctcatcacacagctgcatg 26568338  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 5900589 - 5900532
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacgg 79  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||    
T  5900589 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacgg 5900532  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 43633443 - 43633495
Alignment:
Q  22 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatca 74  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||||||    
T  43633443 cacacggtattctttagtaaaaggcgaaagaatagttcactttgtgctcatca 43633495  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 2341338 - 2341374
Alignment:
Q  31 ttctttagtaaaaggcgaaagaatagttcgctatgtg 67  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  2341338 ttcttttgtaaaaggcgaaagaatagttcgctttgtg 2341374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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