View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_8 (Length: 467)
Name: NF9488_low_8
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 5244480 - 5244431
Alignment:
| Q |
286 |
aaacatacataaagacaaaacctcctagccatttattacaaaaaactgaa |
335 |
Q |
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| T |
5244480 |
aaacatacataaagacaaaacctcctagccatttattacaaaaaactgaa |
5244431 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 5244393 - 5244339
Alignment:
| Q |
394 |
accaatattcctacgacaatctagttttgagacattgaagtctgctaacataaga |
448 |
Q |
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| T |
5244393 |
accaatattcctacgacaatctagttttgagacattgaagtttgctagcataaga |
5244339 |
T |
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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 31824541 - 31824435
Alignment:
| Q |
23 |
aaggatttgcatagcttggattttgtgagaccacataaaccgtggatcgtagttcagcaaagggtgaagcattactataataatgcgttgcataataata |
122 |
Q |
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|||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||| | | ||| ||| ||||||||||||||||| |
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| T |
31824541 |
aaggatttgcatagtttggattttgtgagacctcacaaaccgtggattgtagttcagcaaag---------tcattatgatattgcgttgcataataata |
31824451 |
T |
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| Q |
123 |
agctgcatgacatccc |
138 |
Q |
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| T |
31824450 |
agctgcatgatatccc |
31824435 |
T |
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