View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9488_low_9 (Length: 455)
Name: NF9488_low_9
Description: NF9488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9488_low_9 |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 8 - 351
Target Start/End: Original strand, 13878255 - 13878601
Alignment:
| Q |
8 |
ttggtgttgggtgttgaggtaaagagagaagcattaggtgggtttctaggcaagttgattcaatgggcttgtcaaagatcctgtcattgtggttatgggt |
107 |
Q |
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| T |
13878255 |
ttggtgttgggtgttgaggtaaagagagaagcattaggtgggtttctaggcaagttgattcaatgggcttgtcaaagatcctgtcattgtggttatgggt |
13878354 |
T |
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| Q |
108 |
tttagggcatgtttcttttgtatactgtttaatgatcacgaaacgatggtggtcatcatcatcattagacatatggatatgcatgttcctaataacaaat |
207 |
Q |
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| T |
13878355 |
tttagggcatgtttcttttgtatactgtttaatgataacgaaacgatggtggtcatcatcatcattagacatatggatatgcatgttcctaataacaaat |
13878454 |
T |
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| Q |
208 |
ttagggttcttgaaaagaatgttccaagatcgttgaacacatttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatcta |
307 |
Q |
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| T |
13878455 |
ttagggttcttgaaaagaatgttccaagatctttgaacacatttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatctc |
13878554 |
T |
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| Q |
308 |
cccctagaattccactcattatct---ttcttctgcacagagaaaca |
351 |
Q |
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| T |
13878555 |
cccctagaattccactcattatctttcttcttctgcacagagaaaca |
13878601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 19071467 - 19071410
Alignment:
| Q |
248 |
atttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatc |
305 |
Q |
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| T |
19071467 |
atttaaaacgcataagtgactttgcaggaaatctaactaatatctctgcctccaaatc |
19071410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 19119357 - 19119300
Alignment:
| Q |
248 |
atttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatc |
305 |
Q |
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| T |
19119357 |
atttaaaacgcataagtgactttgcaggaaatctaactaatatctctgcctccaaatc |
19119300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 375 - 440
Target Start/End: Original strand, 13878601 - 13878662
Alignment:
| Q |
375 |
attatttcagaaacaaattaattaatcctcctctctcggtgttgatcttttcaaagggatcgtttt |
440 |
Q |
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| T |
13878601 |
attatttcagaaacaaatt----aatcctcctctctcggtgttgatcttttcaaagggatcgtttt |
13878662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 59015 - 58953
Alignment:
| Q |
248 |
atttaaaacgcataagtgacttt-----gcaggcaatctaactaatatctctgcctccaaatc |
305 |
Q |
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| T |
59015 |
atttaaaacgcataagtgactttcacttgcaggcaatctaactaatatctcttcctccaaatc |
58953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 217 - 266
Target Start/End: Complemental strand, 34169256 - 34169207
Alignment:
| Q |
217 |
ttgaaaagaatgttccaagatcgttgaacacatttaaaacgcataagtga |
266 |
Q |
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| T |
34169256 |
ttgaatagaatgttccaagatcgttgaacgcatttgaaacgcattagtga |
34169207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 21802924 - 21802987
Alignment:
| Q |
248 |
atttaaaacgcataagtgactttgc------aggcaatctaactaatatctctgcctccaaatc |
305 |
Q |
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| T |
21802924 |
atttaaaacgcataagtgactttgcacttgcaggcaatccaactaatatctcttcctccaaatc |
21802987 |
T |
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