View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9489_high_3 (Length: 381)

Name: NF9489_high_3
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9489_high_3
NF9489_high_3
[»] chr7 (11 HSPs)
chr7 (13-365)||(39526826-39527178)
chr7 (8-112)||(39525674-39525778)
chr7 (48-138)||(43938150-43938240)
chr7 (9-138)||(37563610-37563739)
chr7 (12-119)||(3226070-3226177)
chr7 (6-128)||(37563350-37563472)
chr7 (6-128)||(43937890-43938012)
chr7 (9-118)||(34454483-34454592)
chr7 (9-128)||(26825629-26825748)
chr7 (49-112)||(35769775-35769838)
chr7 (7-73)||(3228167-3228233)
[»] chr4 (19 HSPs)
chr4 (29-172)||(53752255-53752398)
chr4 (12-172)||(53753356-53753516)
chr4 (49-172)||(13231278-13231401)
chr4 (6-138)||(22249989-22250121)
chr4 (9-138)||(54961430-54961559)
chr4 (48-138)||(12691444-12691534)
chr4 (48-138)||(47980723-47980813)
chr4 (7-79)||(10128703-10128775)
chr4 (10-138)||(13872325-13872453)
chr4 (9-128)||(53559653-53559772)
chr4 (48-138)||(34238508-34238598)
chr4 (48-138)||(47862190-47862280)
chr4 (48-128)||(12691671-12691751)
chr4 (8-84)||(35602467-35602543)
chr4 (7-117)||(20086434-20086544)
chr4 (48-138)||(26601332-26601422)
chr4 (64-110)||(48532280-48532326)
chr4 (48-128)||(13872107-13872187)
chr4 (90-138)||(53559467-53559515)
[»] chr1 (22 HSPs)
chr1 (9-131)||(28533776-28533898)
chr1 (9-138)||(6056375-6056504)
chr1 (9-138)||(739218-739347)
chr1 (10-138)||(2953720-2953848)
chr1 (10-138)||(5183762-5183890)
chr1 (11-138)||(37152794-37152921)
chr1 (48-138)||(1040336-1040426)
chr1 (48-138)||(1047242-1047332)
chr1 (10-128)||(2953464-2953582)
chr1 (48-138)||(25415100-25415190)
chr1 (48-138)||(46849914-46850004)
chr1 (9-86)||(13873274-13873351)
chr1 (48-128)||(5183544-5183624)
chr1 (48-128)||(5926557-5926637)
chr1 (9-128)||(1047470-1047589)
chr1 (48-118)||(37152471-37152541)
chr1 (48-138)||(46364831-46364921)
chr1 (7-128)||(25414841-25414962)
chr1 (7-128)||(26953098-26953219)
chr1 (90-138)||(12577268-12577316)
chr1 (10-118)||(29043031-29043139)
chr1 (48-128)||(49002914-49002994)
[»] chr2 (15 HSPs)
chr2 (6-175)||(15075095-15075264)
chr2 (10-172)||(14243930-14244092)
chr2 (48-138)||(16367219-16367309)
chr2 (10-138)||(45663764-45663892)
chr2 (9-128)||(16366962-16367081)
chr2 (48-138)||(1149975-1150065)
chr2 (48-138)||(20911168-20911258)
chr2 (26-119)||(34404970-34405063)
chr2 (10-138)||(32519155-32519283)
chr2 (9-138)||(22731788-22731917)
chr2 (48-119)||(43236542-43236613)
chr2 (10-84)||(10446832-10446906)
chr2 (6-84)||(13646076-13646154)
chr2 (46-112)||(15074012-15074078)
chr2 (48-128)||(1150203-1150283)
[»] chr3 (16 HSPs)
chr3 (49-176)||(7463778-7463905)
chr3 (49-176)||(7481876-7482003)
chr3 (8-138)||(10749316-10749446)
chr3 (300-365)||(43698777-43698842)
chr3 (48-138)||(40256912-40257002)
chr3 (92-176)||(7482957-7483041)
chr3 (6-128)||(1741383-1741505)
chr3 (48-138)||(53037065-53037155)
chr3 (48-138)||(10997915-10998002)
chr3 (48-128)||(10998139-10998219)
chr3 (90-138)||(11312991-11313039)
chr3 (48-138)||(21300389-21300479)
chr3 (48-138)||(22129044-22129134)
chr3 (26-79)||(20961034-20961087)
chr3 (48-128)||(30804114-30804194)
chr3 (48-128)||(53037293-53037373)
[»] chr8 (18 HSPs)
chr8 (9-131)||(43073562-43073684)
chr8 (9-138)||(25287791-25287920)
chr8 (8-138)||(43866709-43866839)
chr8 (9-138)||(36623609-36623738)
chr8 (9-138)||(7649-7778)
chr8 (48-138)||(26739755-26739845)
chr8 (48-138)||(37343038-37343128)
chr8 (55-140)||(27856787-27856872)
chr8 (48-138)||(547691-547781)
chr8 (48-138)||(11478183-11478273)
chr8 (50-128)||(29190200-29190278)
chr8 (49-130)||(41251162-41251243)
chr8 (48-176)||(36574855-36574983)
chr8 (9-128)||(37342781-37342900)
chr8 (6-84)||(41773640-41773718)
chr8 (10-128)||(43866977-43867095)
chr8 (48-128)||(7431-7511)
chr8 (48-128)||(40525773-40525853)
[»] chr6 (16 HSPs)
chr6 (5-172)||(22539995-22540162)
chr6 (6-131)||(13480204-13480329)
chr6 (48-138)||(21880620-21880710)
chr6 (48-138)||(32337602-32337692)
chr6 (5-86)||(15523785-15523865)
chr6 (9-128)||(15819756-15819875)
chr6 (48-118)||(23292020-23292090)
chr6 (11-138)||(23291745-23291872)
chr6 (10-138)||(737953-738081)
chr6 (8-128)||(5064333-5064453)
chr6 (8-128)||(13480474-13480594)
chr6 (48-131)||(5064598-5064681)
chr6 (48-138)||(22493919-22494008)
chr6 (8-118)||(30234868-30234978)
chr6 (48-117)||(32337844-32337913)
chr6 (90-138)||(20561183-20561231)
[»] scaffold1493 (1 HSPs)
scaffold1493 (9-138)||(849-978)
[»] chr5 (14 HSPs)
chr5 (8-118)||(32052222-32052332)
chr5 (9-138)||(32052480-32052609)
chr5 (11-138)||(25253087-25253214)
chr5 (11-138)||(25316877-25317004)
chr5 (48-138)||(33735569-33735659)
chr5 (48-138)||(37945032-37945122)
chr5 (6-119)||(33735309-33735422)
chr5 (8-128)||(25253352-25253472)
chr5 (8-128)||(25317143-25317263)
chr5 (48-138)||(6421878-6421968)
chr5 (48-138)||(14745486-14745576)
chr5 (48-128)||(13064675-13064755)
chr5 (48-118)||(12991064-12991134)
chr5 (48-138)||(18013650-18013740)
[»] scaffold0206 (1 HSPs)
scaffold0206 (48-131)||(10363-10446)
[»] scaffold0201 (2 HSPs)
scaffold0201 (48-128)||(13931-14011)
scaffold0201 (48-137)||(14150-14239)
[»] scaffold0321 (1 HSPs)
scaffold0321 (48-138)||(10700-10790)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 39527178 - 39526826
Alignment:
Q  13 ttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttga 112  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  39527178 ttaaatatgtgtttagtccctgtaaatagggtccgtttgaattttcgtccctgtacttactaatccttcaaaaacttccctgcaattactaatcatttga 39527079  T
Q  113 cttttggccgtaattacatatgattacttatgtgtcacataattagtgacatggcgatgacgtgtcacaacgtgactgggacaaggcctttctgactcag 212  Q
    |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39527078 cttttgaccctaattacatctgattacttatgtgtcacataattagtgacatggcgatgacgtgtcacaacatgactgggacaaggcctttctgactcag 39526979  T
Q  213 caattccgacccaaaattactattttgcccttagagaatccagacatatgagaaaagaccaaaatacccctggttcctttctttcctcttccccacatga 312  Q
    ||||||  | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  39526978 caattcataaccaaaattactattttgcccttagagaatccagacatgtgagaaaagaccaaaatacccctggttcctttctttactcttccccacacga 39526879  T
Q  313 atctgaacttccaaactcaaaacatcacaatcccagacatcaaacccaccttc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39526878 atctgaacttccaaactcaaaacatcacaatcccagacatcaaacccaccttc 39526826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 39525674 - 39525778
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatca 107  Q
    |||||||||||||||| ||| |||||| ||||||| ||||||||||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||    
T  39525674 taggcttaaatatgtgtttaatccctgcaaataggatccgtttgaattttcgtccttgtacttactaatcctttcaaaacttccctgcaattactaatca 39525773  T
Q  108 tttga 112  Q
     ||||    
T  39525774 cttga 39525778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 43938240 - 43938150
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||||||||||    
T  43938240 tttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatatgatta 43938150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 37563739 - 37563610
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || |||||||||||||  | || |||||||||||||||||  | ||||||||||||||||     |||||||| || ||||| |    
T  37563739 aggcttaaatatgtctttcgtccctgtaaatataggccatttgaattttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatctt 37563640  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| | |||| |||| ||||||    
T  37563639 ttgacttttggtcctaatcacatctgatta 37563610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 3226070 - 3226177
Alignment:
Q  12 cttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttg 111  Q
    ||||||||||||  | |||| || ||||||||| | |||||||||| ||| ||||||||||||||||||| || |    | |||||||||||||||||||    
T  3226070 cttaaatatgtgtgtggtccgtgcaaatagggttcatttgaatttttgtctctatacttactaatccttcaaatattgtcatgcaattactaatcatttg 3226169  T
Q  112 acttttgg 119  Q
    | ||||||    
T  3226170 agttttgg 3226177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 37563350 - 37563472
Alignment:
Q  6 tttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaat 105  Q
    |||||||||||||||||  || ||||||| |||||  | || |||||||||||||||||  | ||||||||||||| ||     |||||||| || ||||    
T  37563350 tttaggcttaaatatgtcttttgtccctgcaaatataggccatttgaattttcgtccctgaatttactaatccttctaatctgcccctgcaaatattaat 37563449  T
Q  106 catttgacttttggccgtaatta 128  Q
    |||||||||||||| | ||||||    
T  37563450 catttgacttttggtcctaatta 37563472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 43937890 - 43938012
Alignment:
Q  6 tttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaat 105  Q
    |||||||||||||||||  || |||| ||||||||  |  | ||||||||||| |||||  | ||||||||||||||||     |||||||| || ||||    
T  43937890 tttaggcttaaatatgtctttcgtccttgtaaatataggtcatttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaat 43937989  T
Q  106 catttgacttttggccgtaatta 128  Q
    |||||||||||||| | ||||||    
T  43937990 catttgacttttggtcataatta 43938012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 34454483 - 34454592
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    |||||||||||||| ||| ||||||| |||||  |  | ||||||||||||||  |  | ||||||||||||||||   | |||||||| || |||||||    
T  34454483 aggcttaaatatgtccttcgtccctgcaaatataggtcatttgaattttcgtctttgaagttactaatccttccaatctacccctgcaaatattaatcat 34454582  T
Q  109 ttgacttttg 118  Q
    ||||||||||    
T  34454583 ttgacttttg 34454592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 26825629 - 26825748
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || |||||||||||||  |  | |||||||||||||||||  | ||||||||| ||||||     ||||||||  | |||||||    
T  26825629 aggcttaaatatgtctttcgtccctgtaaatataggtcatttgaattttcgtccctgaagttactaatcattccaatctgcccctgcaaagattaatcat 26825728  T
Q  109 ttgacttttggccgtaatta 128  Q
    ||||||||||| | ||||||    
T  26825729 ttgacttttggtcttaatta 26825748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 35769838 - 35769775
Alignment:
Q  49 ttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttga 112  Q
    |||| ||||| | ||||||||||||||||||| |||||   || ||||||||||||||||||||    
T  35769838 ttgagttttcattcctatacttactaatcctttcaaaattgccatgcaattactaatcatttga 35769775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 3228233 - 3228167
Alignment:
Q  7 ttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttact 73  Q
    ||||||||||||||||| ||||||||| ||||||||||    ||||||||| |||| | ||||||||    
T  3228233 ttaggcttaaatatgtgtttagtccctataaatagggttaacttgaatttttgtccttgtacttact 3228167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 29 - 172
Target Start/End: Original strand, 53752255 - 53752398
Alignment:
Q  29 tccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||| |||| |||  |||||||||||||||| ||||||||||||||||| ||||| | |||||||| |||||||||||||||||||||| | ||||||    
T  53752255 tccctgcaaatggggctcgtttgaattttcgtctctatacttactaatcctcccaaaccttccctgcatttactaatcatttgacttttggtcctaatta 53752354  T
Q  129 catatgattacttatgtgtcacataattagtgacatggcgatga 172  Q
    ||| ||||||||||||||||||||||||||| || |||| ||||    
T  53752355 catctgattacttatgtgtcacataattagtcacgtggcaatga 53752398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 53753516 - 53753356
Alignment:
Q  12 cttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttg 111  Q
    |||||||||||| ||  ||||| ||||||| |  |||||||||||||||||||||||||| ||||||| ||||||| | |||||||||||||||||||||    
T  53753516 cttaaatatgtgtttcatccctataaatagtgctcgtttgaattttcgtccctatacttattaatcctcccaaaactttcctgcaattactaatcatttg 53753417  T
Q  112 acttttggccgtaattacatatgattacttatgtgtcacataattagtgacatggcgatga 172  Q
    |||||||| | ||||||||| | | | |||| ||| ||| | |||| ||||||||| ||||    
T  53753416 acttttggtcctaattacatctaaatgcttacgtggcacgtgattaatgacatggcaatga 53753356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 13231278 - 13231401
Alignment:
Q  49 ttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtc 148  Q
    ||||||||| |||||| |||||||||||||| ||||||  |||||||||||| |||||| ||||  ||||| |  ||| |||| |||||||||||||| |    
T  13231278 ttgaattttagtccctgtacttactaatcctcccaaaatttccctgcaattattaatcacttgaaatttggtccaaatcacatttgattacttatgtggc 13231377  T
Q  149 acataattagtgacatggcgatga 172  Q
    |||| | ||||||  |||||||||    
T  13231378 acatgactagtgatgtggcgatga 13231401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 22250121 - 22249989
Alignment:
Q  6 tttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaat 105  Q
    |||||||||||||||||  || ||||||| |||||  | || |||||||||||||||||  | |||||||| ||||||| |   |||||||| || ||||    
T  22250121 tttaggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaat 22250022  T
Q  106 catttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||| | | ||||||||| ||||||    
T  22250021 catttgacttttagtcctaattacatctgatta 22249989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 54961430 - 54961559
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||| ||  || ||||||| |||||  | || |||||||||||||||||  | |||||||||||||||| |   |||||||| || |||||||    
T  54961430 aggcttaaataggtctttcgtccctgcaaatatagaccatttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaatcat 54961529  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||  | ||||||||| ||||||    
T  54961530 ttgacttttgatcataattacatctgatta 54961559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 12691444 - 12691534
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||||||||||||||    ||||| ||| || |||||||||||||||||| | ||||||||| ||||||    
T  12691444 tttgaattttcgtccctgaagttactaatccttccaatctgtccctacaaatattaatcatttgacttttggtcctaattacatctgatta 12691534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 47980723 - 47980813
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||| ||||||||||   |||||||||| || |||||||||||||||||  | ||||||||| ||||||    
T  47980723 tttgaattttcgtccctgaagttactgatccttccaatctatccctgcaaatattaatcatttgacttttgatcctaattacatctgatta 47980813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 79
Target Start/End: Original strand, 10128703 - 10128775
Alignment:
Q  7 ttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatcct 79  Q
    ||||||||||||||||   ||||||||| ||||||||| ||||||||||||  ||| | ||||||||||||||    
T  10128703 ttaggcttaaatatgtttatagtccctgcaaatagggttcgtttgaattttactccatgtacttactaatcct 10128775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 13872453 - 13872325
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    |||||||||||||  || ||||||| |||||  |||  |||||||||| ||||||  | |||||||| |||||||     |||||||| || ||||||||    
T  13872453 ggcttaaatatgtctttcgtccctgcaaatatagtctatttgaatttttgtccctgaagttactaattcttccaatctgcccctgcaaatattaatcatt 13872354  T
Q  110 tgacttttggccgtaattacatatgatta 138  Q
    |||||||||| | ||||||||| ||||||    
T  13872353 tgacttttggtcctaattacatctgatta 13872325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 53559772 - 53559653
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || ||||||| |||||  | || |||||||||||||||||  | ||||||||| ||||||     |||||||| || |||||||    
T  53559772 aggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaagttactaatcgttccaatctgcccctgcaaatattaatcat 53559673  T
Q  109 ttgacttttggccgtaatta 128  Q
    ||||||||||| | ||||||    
T  53559672 ttgacttttggtcctaatta 53559653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 34238508 - 34238598
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||| ||  | |||||||||||| ||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  34238508 tttgaattttcgtctctgaagttactaatcctttcaatatgcccctgcaaatattaatcatttgacttttggtcataattacatctgatta 34238598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 47862190 - 47862280
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||| ||  | ||||||||||||||||     |||||||| ||||||||||||||||||| | | ||||||||| ||||||    
T  47862190 tttgaattttcgtctctgaagttactaatccttccaatctgcccctgcaaatactaatcatttgactttttgtcctaattacatctgatta 47862280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 12691751 - 12691671
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||||||| ||||||  | ||||||||||||||||  |  |||||||| || |||||||||||||||||| | ||||||    
T  12691751 tttgaatttttgtccctgaagttactaatccttccaatccgcccctgcaaatattaatcatttgacttttggtcctaatta 12691671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 35602543 - 35602467
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaa 84  Q
    ||||||||||||||||   |||||||| |||||||   || ||||||||| |||||| |||||||||||||| ||||    
T  35602543 taggcttaaatatgtgtccagtccctgcaaataggcctcggttgaattttagtccctgtacttactaatcctcccaa 35602467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 20086434 - 20086544
Alignment:
Q  7 ttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatc 106  Q
    ||||||||||||||||  || ||| || ||||||  |  | |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||    
T  20086434 ttaggcttaaatatgtctttcgtctctataaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatc 20086533  T
Q  107 atttgactttt 117  Q
    |||||||||||    
T  20086534 atttgactttt 20086544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 26601422 - 26601332
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||||||| |  | ||||||||| |||||| |   || ||||| || |||||||||||||||||| | ||||||||| ||||||    
T  26601422 tttgaattttcgtccatgaagttactaatcattccaatatgcccatgcaaatattaatcatttgacttttggtcctaattacatctgatta 26601332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 110
Target Start/End: Complemental strand, 48532326 - 48532280
Alignment:
Q  64 tatacttactaatccttccaaaacatccctgcaattactaatcattt 110  Q
    |||| |||||||||||| |||||| ||| ||||||||||||||||||    
T  48532326 tatatttactaatcctttcaaaacctccatgcaattactaatcattt 48532280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 13872107 - 13872187
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    ||||||||||||||| |  | ||| |||||||||||| |   || ||||| ||||||||||||||||||||| | ||||||    
T  13872107 tttgaattttcgtccatgaagttattaatccttccaatatgcccttgcaaatactaatcatttgacttttggtcctaatta 13872187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 53559467 - 53559515
Alignment:
Q  90 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  53559467 ccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 53559515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 28533776 - 28533898
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||| || ||||||| ||||||||  |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||    
T  28533776 aggcttaaatatgtgtttcgtccctgcaaatagggctcgtttgaattttcgtccctatacttactaatcctcccaaaccttccctgcaattactaatcat 28533875  T
Q  109 ttgacttttggccgtaattacat 131  Q
    ||||||||||| | |||||||||    
T  28533876 ttgacttttggtcctaattacat 28533898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 6056375 - 6056504
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || ||||||| |||||  |  | |||||||||||||||||| | ||||| |||||||||| |  ||||||||| || |||||||    
T  6056375 aggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctaaaattactgatccttccaatatgtccctgcaaatattaatcat 6056474  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| | ||||||||| ||||||    
T  6056475 ttgacttttggtcctaattacatctgatta 6056504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 739218 - 739347
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||| ||  || ||||||| |||||  | || ||||||||||||||| |  | |||||||||||||||| |   |||||||| || |||||||    
T  739218 aggcttaaataggtttttcgtccctgcaaatatagaccatttgaattttcgtccttgaagttactaatccttccaatatgcccctgcaaatattaatcat 739317  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| | ||||||||| ||||||    
T  739318 ttgacttttggtcctaattacatctgatta 739347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 2953848 - 2953720
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    |||||||||||||  || ||||||| |||||  |  | |||||||||||||||||  | ||||||||||||||||     |||||||| || ||||||||    
T  2953848 ggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatt 2953749  T
Q  110 tgacttttggccgtaattacatatgatta 138  Q
    ||| |||||| | ||||||||||||||||    
T  2953748 tgatttttggtcctaattacatatgatta 2953720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 5183890 - 5183762
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    |||||||||| ||  || ||||||| |||||  | || |||||||||||||||||  | |||| |||||||||||     |||||||| || ||||||||    
T  5183890 ggcttaaatacgtcttttgtccctgcaaatataggccatttgaattttcgtccctgaagttacgaatccttccaatttgcccctgcaaatattaatcatt 5183791  T
Q  110 tgacttttggccgtaattacatatgatta 138  Q
    |||||||||| | ||||||||||||||||    
T  5183790 tgacttttggtcctaattacatatgatta 5183762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 37152921 - 37152794
Alignment:
Q  11 gcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcattt 110  Q
    ||||||||||||  || ||||||| |||||  |||| |||||||||||||| ||  | ||||||||||||||||     |||||||| || |||||||||    
T  37152921 gcttaaatatgtctttcgtccctgcaaatatagtccatttgaattttcgtctctgaagttactaatccttccaatctgcccctgcaaatattaatcattt 37152822  T
Q  111 gacttttggccgtaattacatatgatta 138  Q
    ||||||| | | ||||||||| ||||||    
T  37152821 gacttttagtcctaattacatctgatta 37152794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 1040336 - 1040426
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||| ||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||||||||||    
T  1040336 tttgaatttttgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatatgatta 1040426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 1047242 - 1047332
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||| ||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||||||||||    
T  1047242 tttgaatttttgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatatgatta 1047332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 2953464 - 2953582
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    |||||||||||||  || |||||||||||||  |  | |||||||||||||||||| | |||||||||||| |||     |||||||| || ||||||||    
T  2953464 ggcttaaatatgtctttcgtccctgtaaatataggtcatttgaattttcgtccctaaagttactaatcctttcaatctgcccctgcaaatattaatcatt 2953563  T
Q  110 tgacttttggccgtaatta 128  Q
    |||||||||| | ||||||    
T  2953564 tgacttttggtcataatta 2953582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 25415190 - 25415100
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||||| |||  | |||||||||||||||| |  | ||||||| || ||| |||||||||||||| | ||||||||| ||||||    
T  25415190 tttgaattttcgttcctgaagttactaatccttccaatatgttcctgcaaatattaaccatttgacttttggtcctaattacatctgatta 25415100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 46850004 - 46849914
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||| ||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  46850004 tttgaattttcgtccctgaagttactgatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 46849914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 13873351 - 13873274
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaa 86  Q
    ||||||||||||||  |||||||||| ||||| | |    ||||||||| || |||||||||||||||||||||||||    
T  13873351 aggcttaaatatgtatttagtccctgcaaatatgatttacttgaatttttgttcctatacttactaatccttccaaaa 13873274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 5183544 - 5183624
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    ||||||||||||||| || | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||    
T  5183544 tttgaattttcgtccataaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 5183624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 5926557 - 5926637
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||||||||||||||  | |||||||||||||||| |   ||||||||  | |||||||||||||||||| | ||||||    
T  5926557 tttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaacattaatcatttgacttttggtcttaatta 5926637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 1047589 - 1047470
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  ||  ||||||||||||  |  | |||||||||||||| ||  | ||||||||||||||||     |||||||| || |||||||    
T  1047589 aggcttaaatatgtctttcatccctgtaaatataggtcatttgaattttcgtctctgaagttactaatccttccaatctgcccctgcaaatattaatcat 1047490  T
Q  109 ttgacttttggccgtaatta 128  Q
    ||||||||||| | ||||||    
T  1047489 ttgacttttggtcctaatta 1047470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 37152471 - 37152541
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttg 118  Q
    ||||||||||||||| |  | |||||||||||||||| |   || ||||| ||||||||||||||||||||    
T  37152471 tttgaattttcgtccatgaagttactaatccttccaatatgcccttgcaaatactaatcatttgacttttg 37152541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 46364921 - 46364831
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||||||| |  | |||||||||||| ||| |   |||||||| || |||||||||||||||||  | ||||||||| ||||||    
T  46364921 tttgaattttcgtccttgaaattactaatcctttcaatatgcccctgcaaatattaatcatttgacttttgatcctaattacatctgatta 46364831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 25414841 - 25414962
Alignment:
Q  7 ttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatc 106  Q
    ||||||||||||||||  || ||||||  |||||  | || ||||||||||| || ||  | ||||||||||||||||     |||||||| || |||||    
T  25414841 ttaggcttaaatatgtctttcgtccctacaaatataggccatttgaattttcttctctgaagttactaatccttccaatctgcccctgcaaatattaatc 25414940  T
Q  107 atttgacttttggccgtaatta 128  Q
    ||||||||||||| | ||||||    
T  25414941 atttgacttttggtcctaatta 25414962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 26953098 - 26953219
Alignment:
Q  7 ttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatc 106  Q
    ||||||||||||||||  || |||| || |||||  | |  |||||||||||||||||  | |||||||||||| |||     |||||||| || |||||    
T  26953098 ttaggcttaaatatgtctttcgtccttgcaaatatagactatttgaattttcgtccctgaagttactaatcctttcaatctgcccctgcaaatattaatc 26953197  T
Q  107 atttgacttttggccgtaatta 128  Q
    ||||||||||||| | ||||||    
T  26953198 atttgacttttggtcctaatta 26953219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 12577316 - 12577268
Alignment:
Q  90 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  12577316 ccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 12577268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 118
Target Start/End: Complemental strand, 29043139 - 29043031
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    |||||||||||||  || ||| ||| |||||  | || |||||||||||||||||  | |||||||||||| |||     |||||||| || ||||||||    
T  29043139 ggcttaaatatgtctttcgtctctgcaaatataggccatttgaattttcgtccctgaagttactaatcctttcaatctgcccctgcaaatattaatcatt 29043040  T
Q  110 tgacttttg 118  Q
    |||||||||    
T  29043039 tgacttttg 29043031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 49002914 - 49002994
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    ||||||||||||||| |  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||    
T  49002914 tttgaattttcgtccatgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 49002994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 15075264 - 15075095
Alignment:
Q  6 tttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaat 105  Q
    |||||||||||||||||   ||||||| | |||||||||  ||||||||||| ||| || |||||||||||||||||||||  ||| |||||||||||||    
T  15075264 tttaggcttaaatatgtctatagtcccagcaaatagggtttgtttgaattttagtctctgtacttactaatccttccaaaatttccatgcaattactaat 15075165  T
Q  106 catttgacttttggccgtaattacatatgattacttatgtgtcacataattagtgacatggcgatgacgt 175  Q
    ||||| | |||||| | |||| || | ||| | |||||||| ||||| |||| | |  ||||||||||||    
T  15075164 catttaatttttggtcctaatcacgtttgagtgcttatgtggcacatgattactaatgtggcgatgacgt 15075095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 14244092 - 14243930
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    ||||||||||||||  |||  |||| ||||||||  |||||||||||| |||| | |||||| || ||| |||| ||  ||||||||| |||||||||||    
T  14244092 ggcttaaatatgtgtatagctcctgcaaatagggctcgtttgaatttttgtccatgtacttattattccctccacaatttccctgcaaatactaatcatt 14243993  T
Q  110 tgacttttggccgtaattacatatgattacttatgtgtcacataattagtgacatggcgatga 172  Q
    ||| |||| | | ||||  ||| |||||||||||||| ||||| ||||||||| | |||||||    
T  14243992 tgagttttagtcctaatctcatttgattacttatgtggcacatgattagtgacgtagcgatga 14243930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 16367309 - 16367219
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | |||||||||||||||| |   |||||||| || |||||||||||||||||| | ||||||||||||||||    
T  16367309 tttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaatcatttgacttttggtcctaattacatatgatta 16367219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 45663892 - 45663764
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    |||||||||||||  || |||||||||||||  |||  |||||||||||||||||  | ||||||||||||| ||     |||||||| || ||||||||    
T  45663892 ggcttaaatatgtctttcgtccctgtaaatatagtcaatttgaattttcgtccctgaagttactaatccttcaaatctggccctgcaaatattaatcatt 45663793  T
Q  110 tgacttttggccgtaattacatatgatta 138  Q
    |||||||||| | ||||||||| ||||||    
T  45663792 tgacttttggtcctaattacatctgatta 45663764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 16366962 - 16367081
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || |||||||||||||  |  | |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||    
T  16366962 aggcttaaatatgtctttcgtccctgtaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 16367061  T
Q  109 ttgacttttggccgtaatta 128  Q
    ||||||||||| | ||||||    
T  16367062 ttgacttttggtcctaatta 16367081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 1149975 - 1150065
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  1149975 tttgaattttcgtccctgaagttactaatccttccaatcggcccctgcaaatattaatcatttgacttttggtcctaattacatttgatta 1150065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 20911168 - 20911258
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  20911168 tttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcataattacatctgatta 20911258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 119
Target Start/End: Complemental strand, 34405063 - 34404970
Alignment:
Q  26 tagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttgg 119  Q
    ||||||||| ||||||||  |  ||||||||| |||| | |||||||||||||| ||||||  ||||||||| | |||||||||||| ||||||    
T  34405063 tagtccctgcaaatagggctcaattgaattttagtccatgtacttactaatcctcccaaaatttccctgcaaattctaatcatttgagttttgg 34404970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 32519155 - 32519283
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    |||||||||||||  || ||||||| |||||  |  | |||||||||||||||||  | |||||||||||||||| |    ||||||| || ||||||||    
T  32519155 ggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaaattactaatccttccaatatgctcctgcaaatattaatcatt 32519254  T
Q  110 tgacttttggccgtaattacatatgatta 138  Q
    ||||||||||   ||||||||| ||||||    
T  32519255 tgacttttggttctaattacatctgatta 32519283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 22731917 - 22731788
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || ||||||| |||||  | || ||||||||||||||| |  | |||||| ||||| |||    ||||||||| || |||||||    
T  22731917 aggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccgtgaagttactattcctttcaatctgtccctgcaaatattaatcat 22731818  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| | | ||||||| ||||||    
T  22731817 ttgacttttggtccttattacatctgatta 22731788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 43236542 - 43236613
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttgg 119  Q
    |||||| |||| |||||  ||||||||||||| ||||| | ||||||||| || ||||||||||| ||||||    
T  43236542 tttgaaatttcatccctgaacttactaatcctcccaaaccttccctgcaaatattaatcatttgagttttgg 43236613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 10446832 - 10446906
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaa 84  Q
    |||||||||||||  || ||||||| |||||  | || |||||||||||||||||  | ||||||||||||||||    
T  10446832 ggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaagttactaatccttccaa 10446906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 13646076 - 13646154
Alignment:
Q  6 tttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaa 84  Q
    ||||||||||||||||||   |||||||| |||||||   |  ||||||||| |||||| |||||||||||||| ||||    
T  13646076 tttaggcttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaa 13646154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Original strand, 15074012 - 15074078
Alignment:
Q  46 cgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttga 112  Q
    |||||||||||| ||||||  ||||||||||| ||||||||  |||| |||||| ||||||| ||||    
T  15074012 cgtttgaattttagtccctgcacttactaatcattccaaaatttccccgcaatttctaatcacttga 15074078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 1150283 - 1150203
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||||||||||||||  | |||||||||||| |||     |||||||| || |||||||||||||||||| | ||||||    
T  1150283 tttgaattttcgtccctgaaattactaatcctttcaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 1150203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 7463778 - 7463905
Alignment:
Q  49 ttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtc 148  Q
    ||||||||||||||| ||||||||||||||| |||||| ||   |||||||| ||||||||||| |||||| | ||||| ||| ||||||||||| || |    
T  7463778 ttgaattttcgtccccatacttactaatcctcccaaaaaatttatgcaattattaatcatttgagttttggtcataatttcatttgattacttatatgac 7463877  T
Q  149 acataattagtgacatggcgatgacgtg 176  Q
    |||| |||| ||| |||| |||||||||    
T  7463878 acatgattaatgagatggtgatgacgtg 7463905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 7481876 - 7482003
Alignment:
Q  49 ttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtc 148  Q
    |||||||||||||||||||||||||||| || || |||  |||||||||||| ||||||||||  |||||| | ||||  ||| ||||||||||| || |    
T  7481876 ttgaattttcgtccctatacttactaattctcccgaaatttccctgcaattattaatcatttgggttttggtcataatctcatttgattacttatatggc 7481975  T
Q  149 acataattagtgacatggcgatgacgtg 176  Q
    |||| |||||||| |||| |||||||||    
T  7481976 acatgattagtgagatggtgatgacgtg 7482003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 10749316 - 10749446
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatca 107  Q
    |||||||||||| ||  || |||||||||||||  |  | |||||||||||||||||  | ||||||||||||| ||   |||||||||| || ||||||    
T  10749316 taggcttaaataggtctttcgtccctgtaaatataggtcatttgaattttcgtccctgaagttactaatccttctaatctatccctgcaaatattaatca 10749415  T
Q  108 tttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||| | ||||||||| ||||||    
T  10749416 tttgacttttggtcctaattacatctgatta 10749446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 365
Target Start/End: Original strand, 43698777 - 43698842
Alignment:
Q  300 cttccccacatgaatctgaacttccaaactcaaaacatcacaatcccagacatcaaacccaccttc 365  Q
    |||||| ||| |||||||||||||||| |||||||||||||||||| | |||||||||||||||||    
T  43698777 cttccctacaggaatctgaacttccaagctcaaaacatcacaatccaatacatcaaacccaccttc 43698842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 40256912 - 40257002
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | |||||||||||||||| |   || ||||| || |||||||||||||||||| | ||||||||| ||||||    
T  40256912 tttgaattttcgtccctgaagttactaatccttccaatatgcccttgcaaatattaatcatttgacttttggtcctaattacatctgatta 40257002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 7483041 - 7482957
Alignment:
Q  92 ctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgtcacataattagtgacatggcgatgacgtg 176  Q
    ||||||||||||||||||||| |||||| | ||||   || ||||| |||||||| |||||||||| |||  |||||||||||||    
T  7483041 ctgcaattactaatcatttgagttttggtcctaatctaatttgattgcttatgtggcacataattaatgaggtggcgatgacgtg 7482957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 1741383 - 1741505
Alignment:
Q  6 tttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaat 105  Q
    |||||||||||||||||  || ||||||| |||||  |  | |||||||||||||||||  | ||||||||||||||||     || ||||| || ||||    
T  1741383 tttaggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccttgcaaatattaat 1741482  T
Q  106 catttgacttttggccgtaatta 128  Q
    |||||||||||||| | ||||||    
T  1741483 catttgacttttggtcctaatta 1741505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 53037065 - 53037155
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | |||||||||||||||| | | |||||||| || || ||||||||| ||||  | ||||||||| ||||||    
T  53037065 tttgaattttcgtccctgaagttactaatccttccaatatacccctgcaaatattagtcatttgacatttgatcataattacatctgatta 53037155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 10997915 - 10998002
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||||||||||||||    |||||| || || |||||||||||||||||  | ||||||||| ||||||    
T  10997915 tttgaattttcgtccctgaagttactaatccttccaa---ttccctgtaaatattaatcatttgacttttgatcctaattacatctgatta 10998002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 10998219 - 10998139
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||    
T  10998219 tttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcataatta 10998139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 11313039 - 11312991
Alignment:
Q  90 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||| ||||||||||||||||||||| | ||||||||| ||||||    
T  11313039 ccctgcaaatactaatcatttgacttttggtcctaattacatctgatta 11312991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 21300479 - 21300389
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||| ||  | |||||||||||| ||     |||||| || || |||||||||||||||||||| ||||||||| ||||||    
T  21300479 tttgaattttcgtctctgaagttactaatcctttcagtctgtccctgtaaatattaatcatttgacttttggccctaattacatctgatta 21300389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 22129044 - 22129134
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||| ||  | ||||||||||||||||     |||||||| || |||||||||||||||| | | ||||||||| ||||||    
T  22129044 tttgaattttcgtcactgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttcgtcctaattacatctgatta 22129134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 20961034 - 20961087
Alignment:
Q  26 tagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatcct 79  Q
    ||||||||| ||||||||  |  ||||||||||| |||||||||||||||||||    
T  20961034 tagtccctgcaaatagggctcagttgaattttcgcccctatacttactaatcct 20961087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 30804194 - 30804114
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    ||||||||||||| |||  | ||||||||||||||||    || |||||| || |||||||||||||||||| | ||||||    
T  30804194 tttgaattttcgttcctgaagttactaatccttccaatctgtcactgcaaatattaatcatttgacttttggtcctaatta 30804114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 53037373 - 53037293
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||||||||||||||| | ||||| |||||| |||     |||||||| || |||||||||||||||||| | ||||||    
T  53037373 tttgaattttcgtccctacagttactgatcctttcaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 53037293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 43073562 - 43073684
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||| || ||||||| ||||||||  |||||||||||| ||||||| |||||| |||||| | ||| | ||||||||||||||||||||    
T  43073562 aggcttaaatatgtgtttcgtccctgcaaatagggctcgtttgaatttttgtccctacacttaccaatcctcctaaaccttccctgcaattactaatcat 43073661  T
Q  109 ttgacttttggccgtaattacat 131  Q
     | |||||||  | |||||||||    
T  43073662 atcacttttgatcctaattacat 43073684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 138
Target Start/End: Original strand, 25287791 - 25287920
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || |||||||||||||  | || |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||    
T  25287791 aggcttaaatatgtctttcgtccctgtaaatattggccatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 25287890  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| | ||||||||| ||||||    
T  25287891 ttgacttttggtcctaattacatctgatta 25287920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 43866709 - 43866839
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatca 107  Q
    |||||||||||||||  || ||||||| |||||  | || |||||||||||||||||  | |||||||| ||||||| |   |||||||| || ||||||    
T  43866709 taggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaatca 43866808  T
Q  108 tttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||| | ||||||||| ||||||    
T  43866809 tttgacttttggtcctaattacatctgatta 43866839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 36623738 - 36623609
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || ||||||| |||||  | || |||||||||||||||||  | |||||||| ||||||| |   |||||||| || |||||||    
T  36623738 aggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaatcat 36623639  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| | ||||||||| ||||||    
T  36623638 ttgacttttggtcctaattacatctgatta 36623609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 7778 - 7649
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||| ||  || ||||||| |||||  | || ||||||||||||||| |  | |||||||||||||||| |   |||||||| || |||||||    
T  7778 aggcttaaataggtctttcgtccctgcaaatataggccatttgaattttcgtccatgaagttactaatccttccaatatgcccctgcaaatattaatcat 7679  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| | ||||||||| ||||||    
T  7678 ttgacttttggtcataattacatctgatta 7649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 26739755 - 26739845
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | |||||||||||| ||| |  ||||||||| || |||||||||||| ||||| | ||||||||| ||||||    
T  26739755 tttgaattttcgtccctgaaattactaatcctttcaatatgtccctgcaaatattaatcatttgacgtttggtcctaattacatctgatta 26739845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 37343128 - 37343038
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | |||||||| ||||||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  37343128 tttgaattttcgtccctgaaattactaattcttccaatatgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 37343038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 140
Target Start/End: Original strand, 27856787 - 27856872
Alignment:
Q  55 tttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattact 140  Q
    ||||||||||  | ||||||||||||||||  |  |||||||| || |||||||||||||||||| | ||||||||| ||||||||    
T  27856787 tttcgtccctgaagttactaatccttccaatccgcccctgcaaatattaatcatttgacttttggtcttaattacatttgattact 27856872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 547781 - 547691
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||| | ||||||||||||||||     | || ||| || |||||||||||||||||| | ||||||||| ||||||    
T  547781 tttgaattttcgtccctaaagttactaatccttccaatctgccactacaaatattaatcatttgacttttggtcctaattacatctgatta 547691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 11478183 - 11478273
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||||||| |  | |||||||||||| |||     |||||||| || |||||||||||||||||||| ||||||||| ||||||    
T  11478183 tttgaattttcgtccttgaagttactaatcctttcaatctgcccctgcaaatattaatcatttgacttttggccctaattacatctgatta 11478273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 29190200 - 29190278
Alignment:
Q  50 tgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||||||||| ||  | ||||||||||||||||   |||||||||| || |||||||||||||||||| | ||||||    
T  29190200 tgaattttcgtctctgaagttactaatccttccaatctatccctgcaaatattaatcatttgacttttggtcctaatta 29190278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 130
Target Start/End: Original strand, 41251162 - 41251243
Alignment:
Q  49 ttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattaca 130  Q
    ||||||||||||| ||  | |||||||||||||||| |  ||||| ||| || |||||||||||||||||| | ||||||||    
T  41251162 ttgaattttcgtctctgaagttactaatccttccaatatgtccctacaaatattaatcatttgacttttggtcataattaca 41251243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 36574855 - 36574983
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgattacttatgtgt 147  Q
    |||||| |||| |||||  ||||||||||||| ||||| | ||||||||| || ||||||||||| |||||| | |||  |||| | |||||  | |||     
T  36574855 tttgaaatttcatccctgaacttactaatcctcccaaatcttccctgcaaatattaatcatttgagttttggtcctaaacacatttaattaccgacgtgg 36574954  T
Q  148 cacataattagtgacatggcgatgacgtg 176  Q
    ||||| ||||||||  ||| |||||||||    
T  36574955 cacatgattagtgaggtggtgatgacgtg 36574983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 128
Target Start/End: Original strand, 37342781 - 37342900
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    |||||||||||| |  || ||||||| |||||  | || ||||||||||||| |||  | |||||||||||| |||  |  |||||||| || |||||||    
T  37342781 aggcttaaatatctttttcgtccctgcaaatacagaccatttgaattttcgttcctgaagttactaatcctttcaatccgcccctgcaaatattaatcat 37342880  T
Q  109 ttgacttttggccgtaatta 128  Q
    ||||||||||| | ||||||    
T  37342881 ttgacttttggtcctaatta 37342900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 41773718 - 41773640
Alignment:
Q  6 tttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaa 84  Q
    ||||||||||||||||||   |||||||| |||||||   |  ||||||||| |||||| |||||||||||||| ||||    
T  41773718 tttaggcttaaatatgtgtccagtccctgcaaataggcctcagttgaattttagtccctgtacttactaatcctcccaa 41773640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 43867095 - 43866977
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    |||||||||||||  || ||||||| |||||  | || ||||||||||||||| |  | |||||||||||| |||     |||||||| || ||||||||    
T  43867095 ggcttaaatatgtttttcgtccctgcaaatatagaccatttgaattttcgtccatgaagttactaatcctttcaatctgcccctgcaaatattaatcatt 43866996  T
Q  110 tgacttttggccgtaatta 128  Q
    |||||||||| | ||||||    
T  43866995 tgacttttggtcctaatta 43866977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 7431 - 7511
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    ||||||||||| |||||  | |||||||| ||||||| |  ||||| ||| || |||||||||||||||||| | ||||||    
T  7431 tttgaattttcttccctgaagttactaattcttccaacatgtccctacaaatattaatcatttgacttttggtcataatta 7511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 40525853 - 40525773
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||||||||||||||  | ||||||||| ||||||     |||||||| || |||||||||||||||||| | ||||||    
T  40525853 tttgaattttcgtccctgaaattactaatcattccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 40525773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 172
Target Start/End: Original strand, 22539995 - 22540162
Alignment:
Q  5 atttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaa 104  Q
    ||||||||||||||||||| ||||||| |||||||||    |  || | |||||||| |||||||||||||||||| ||||   ||||| ||||||| ||    
T  22539995 atttaggcttaaatatgtgtttagtccttgtaaatagatctcagttaagttttcgtcgctatacttactaatcctttcaaactttccctacaattaccaa 22540094  T
Q  105 tcatttgacttttggccgtaattacatatgattacttatgtgtcacataattagtgacatggcgatga 172  Q
    |||||||| ||||||   ||||  ||| ||||||||| |||| ||  | ||||||||| |||||||||    
T  22540095 tcatttgaattttggttctaatctcatttgattacttttgtggcaattgattagtgacgtggcgatga 22540162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 13480204 - 13480329
Alignment:
Q  6 tttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaat 105  Q
    |||||||||||||||||  || ||||||| |||||  | || |||||||||||||||||  | ||||||||||||||||     |||||||| || ||||    
T  13480204 tttaggcttaaatatgtctttcgtccctgcaaatataggccatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaat 13480303  T
Q  106 catttgacttttggccgtaattacat 131  Q
    |||||||||||||| | |||||||||    
T  13480304 catttgacttttggtcctaattacat 13480329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 21880710 - 21880620
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||||||||||||||   |||||||||| || ||| |||||||||||||| | ||||||||| ||||||    
T  21880710 tttgaattttcgtccctgaagttactaatccttccaatctatccctgcaaatattaagcatttgacttttggtcctaattacatctgatta 21880620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 32337602 - 32337692
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | |||||||||||||||| |   |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  32337602 tttgaattttcgtccctgaagttactaatccttccaatatgcccctgcaaatattaatcatttgacttttgggcctaattacatctgatta 32337692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 15523785 - 15523865
Alignment:
Q  5 atttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaa 86  Q
    ||||||||||||||||||| |||||||| ||||||| ||| | ||||||||||||  | |||||||||||||| ||||||||    
T  15523785 atttaggcttaaatatgtgtttagtccc-gtaaatatggttcatttgaattttcgctcttatacttactaatctttccaaaa 15523865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 15819875 - 15819756
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || ||||||| |||||  |  | |||||||||||||||||  | ||||||||||||||||   | || ||||| ||||||||||    
T  15819875 aggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctacccttgcaaatactaatcat 15819776  T
Q  109 ttgacttttggccgtaatta 128  Q
    ||||||||||| | ||||||    
T  15819775 ttgacttttggtcctaatta 15819756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 23292090 - 23292020
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttg 118  Q
    |||||||||||||||||  | ||||||||||||||||   |||||||||| || |||||||||||||||||    
T  23292090 tttgaattttcgtccctgaagttactaatccttccaatctatccctgcaaatattaatcatttgacttttg 23292020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 23291745 - 23291872
Alignment:
Q  11 gcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcattt 110  Q
    ||||||||||||  || ||||||  |||||  | || ||||||||||| |||||  | ||||||||||||||||     |||||||| || |||||||||    
T  23291745 gcttaaatatgtctttcgtccctacaaatataggccatttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaatcattt 23291844  T
Q  111 gacttttggccgtaattacatatgatta 138  Q
    ||||||||| | ||||||||| ||||||    
T  23291845 gacttttggtcctaattacatctgatta 23291872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 738081 - 737953
Alignment:
Q  10 ggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatt 109  Q
    |||||||||||||  || ||||||| |||||  |  | ||||||||||||||| |  | ||||||||||||||||     |||| ||| || ||||||||    
T  738081 ggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccatgaagttactaatccttccaatctgccccttcaagtattaatcatt 737982  T
Q  110 tgacttttggccgtaattacatatgatta 138  Q
    |||||||||| | ||||||||| ||||||    
T  737981 tgacttttggtcctaattacatctgatta 737953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Original strand, 5064333 - 5064453
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatca 107  Q
    |||||||||||||||  || |||||||||||||     | |||||||||||||||||  | ||||||||||| ||||     |||||||| || ||||||    
T  5064333 taggcttaaatatgtctttcgtccctgtaaatataagtcatttgaattttcgtccctgaagttactaatcctcccaatttgcccctgcaaatattaatca 5064432  T
Q  108 tttgacttttggccgtaatta 128  Q
    |||||||||||| | ||||||    
T  5064433 tttgacttttggtcctaatta 5064453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 13480594 - 13480474
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatca 107  Q
    |||||||||||||||  || |||| ||||||||  |  | |||||||||||||||||  | ||||||||||||||||     |||| ||| || ||||||    
T  13480594 taggcttaaatatgtctttcgtccttgtaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctacaaatattaatca 13480495  T
Q  108 tttgacttttggccgtaatta 128  Q
    |||||||||||| | ||||||    
T  13480494 tttgacttttggtcctaatta 13480474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 5064681 - 5064598
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacat 131  Q
    |||||||||||||||||    ||||||||||||||||     |||||||| || |||||||||||||||||| | |||||||||    
T  5064681 tttgaattttcgtccctgaggttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacat 5064598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 22493919 - 22494008
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||||||| || |||   | |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  22493919 tttgaattttcgtccctgaagttactaatcttttcaatcta-ccctgcaaatattaatcatttgacttttggtcctaattacatttgatta 22494008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 30234978 - 30234868
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatca 107  Q
    |||||||||||||||  || ||||||| |||||  |   |||||||||||| |||||  | ||||||||||||||||     |||||||| || ||||||    
T  30234978 taggcttaaatatgtctttcgtccctgcaaatataggttgtttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaatca 30234879  T
Q  108 tttgacttttg 118  Q
    |||||||||||    
T  30234878 tttgacttttg 30234868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 32337913 - 32337844
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgactttt 117  Q
    |||||||||||||||||  | ||||| |||||||||| |   |||||||| || ||||||||||||||||    
T  32337913 tttgaattttcgtccctgaagttactgatccttccaatatgcccctgcaaatattaatcatttgactttt 32337844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 20561231 - 20561183
Alignment:
Q  90 ccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  20561231 ccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 20561183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1493 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1493
Description:

Target: scaffold1493; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 978 - 849
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || |||||||||||||  | || |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||    
T  978 aggcttaaatatgtctttcgtccctgtaaatattggccatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 879  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| | |||||| || ||||||    
T  878 ttgacttttggtcctaattatatctgatta 849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 118
Target Start/End: Original strand, 32052222 - 32052332
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatca 107  Q
    |||||||||||||||  || |||||||||||||  |  | |||||||||||||||||  | ||||||||||||||||  |  |||||||| || ||||||    
T  32052222 taggcttaaatatgtttttcgtccctgtaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatccgcccctgcaaatattaatca 32052321  T
Q  108 tttgacttttg 118  Q
    |||||||||||    
T  32052322 tttgacttttg 32052332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 138
Target Start/End: Complemental strand, 32052609 - 32052480
Alignment:
Q  9 aggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcat 108  Q
    ||||||||||||||  || ||||||| |||||  |  | |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||    
T  32052609 aggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcat 32052510  T
Q  109 ttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| | ||||||||| ||||||    
T  32052509 ttgacttttggtcctaattacatctgatta 32052480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 25253087 - 25253214
Alignment:
Q  11 gcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcattt 110  Q
    ||||||||||||  ||  |||||| |||||  || | |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||||    
T  25253087 gcttaaatatgtctttcatccctgcaaatatagttcatttgaattttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcattt 25253186  T
Q  111 gacttttggccgtaattacatatgatta 138  Q
    ||||||||| | ||||||||| ||||||    
T  25253187 gacttttggtcctaattacatctgatta 25253214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 25316877 - 25317004
Alignment:
Q  11 gcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcattt 110  Q
    ||||||||||||  ||  |||||| |||||  || | |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||||    
T  25316877 gcttaaatatgtctttcatccctgcaaatatagttcatttgaattttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcattt 25316976  T
Q  111 gacttttggccgtaattacatatgatta 138  Q
    ||||||||| | ||||||||| ||||||    
T  25316977 gacttttggtcctaattacatctgatta 25317004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 33735659 - 33735569
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  33735659 tttgaattttcgtccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 33735569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 37945032 - 37945122
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  37945032 tttgaattttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 37945122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 33735309 - 33735422
Alignment:
Q  6 tttaggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaat 105  Q
    |||||||||||||||||  || ||||||  |||||  | || ||||| |||||||||||  | ||||||||||||||||    ||||||||| || ||||    
T  33735309 tttaggcttaaatatgtctttcgtccctacaaatataggccatttgatttttcgtccctgaaattactaatccttccaatctgtccctgcaaatattaat 33735408  T
Q  106 catttgacttttgg 119  Q
    ||||||||||||||    
T  33735409 catttgacttttgg 33735422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 25253472 - 25253352
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatca 107  Q
    |||||||||||||||  || ||||||| |||||  |  | |||||||||||||||||  | ||||||||||||||||     || ||||| |||||||||    
T  25253472 taggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccttgcaaatactaatca 25253373  T
Q  108 tttgacttttggccgtaatta 128  Q
    |||||||||||| | ||||||    
T  25253372 tttgacttttggtcctaatta 25253352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 25317263 - 25317143
Alignment:
Q  8 taggcttaaatatgtgcttagtccctgtaaatagggtccgtttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatca 107  Q
    |||||||||||||||  || ||||||| |||||  |  | |||||||||||||||||  | ||||||||||||||||     || ||||| |||||||||    
T  25317263 taggcttaaatatgtctttcgtccctgcaaatataggtcatttgaattttcgtccctgaagttactaatccttccaatctgcccttgcaaatactaatca 25317164  T
Q  108 tttgacttttggccgtaatta 128  Q
    |||||||||||| | ||||||    
T  25317163 tttgacttttggtcctaatta 25317143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Complemental strand, 6421968 - 6421878
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | |||||||||||| ||| |   |||||||| || |||||||||||||||||| | ||| ||||| ||||||    
T  6421968 tttgaattttcgtccctgaaattactaatcctttcaatatgcccctgcaaatattaatcatttgacttttggtcctaagtacatctgatta 6421878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 14745486 - 14745576
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||| |||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||||| ||||||    
T  14745486 tttgaattttcatccctgaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaattacatctgatta 14745576  T

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Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 13064755 - 13064675
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||||||||||| ||| | ||||||||||||||||     |||||||| || |||||||||||||||||| | ||||||    
T  13064755 tttgaattttcgtctctaaagttactaatccttccaatctgcccctgcaaatattaatcatttgacttttggtcctaatta 13064675  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 12991134 - 12991064
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttg 118  Q
    |||||||||||||| ||  | ||||||||||||||||   | |||||||| || |||||||||||||||||    
T  12991134 tttgaattttcgtctctgaagttactaatccttccaatctacccctgcaaatattaatcatttgacttttg 12991064  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 18013650 - 18013740
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    ||||||||||||||  |  | |||||||||||||||| |   |||||||| || ||||||||||||||||||   ||||||||| ||||||    
T  18013650 tttgaattttcgtcagtgaagttactaatccttccaatatgcccctgcaaatattaatcatttgacttttggttttaattacatctgatta 18013740  T

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Target: scaffold0206 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 10363 - 10446
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacat 131  Q
    |||||||||||||||||  | ||||||||||||||||     |||||||| || |||||||||||||||||| | |||||||||    
T  10363 tttgaattttcgtccctgaagttactaatccttccaatttgcccctgcaaatattaatcatttgacttttggtcctaattacat 10446  T

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Target: scaffold0201 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 13931 - 14011
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaatta 128  Q
    |||||||||||||| ||  | ||||||||||||||||   | |||||||| || |||||||||||||||||| | ||||||    
T  13931 tttgaattttcgtcactcaaattactaatccttccaacctacccctgcaaatattaatcatttgacttttggtcctaatta 14011  T

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Target: scaffold0201; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 14239 - 14150
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatt 137  Q
    ||||||||||| || ||  | ||||||||||||||||     |||| ||| || |||||||||||||||||| | |||||||||||||||    
T  14239 tttgaattttcatcactgaagttactaatccttccaatctgcccctacaaatattaatcatttgacttttggtcctaattacatatgatt 14150  T

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Target: scaffold0321 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 10700 - 10790
Alignment:
Q  48 tttgaattttcgtccctatacttactaatccttccaaaacatccctgcaattactaatcatttgacttttggccgtaattacatatgatta 138  Q
    |||||||||||||||||  | ||| |||||||| ||| |   |||||||| || |||||||||||||||||| | ||| ||||| ||||||    
T  10700 tttgaattttcgtccctgaaattattaatcctttcaatatgcccctgcaaatattaatcatttgacttttggtcctaactacatctgatta 10790  T

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