View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9489_high_8 (Length: 273)
Name: NF9489_high_8
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9489_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 251133 - 251357
Alignment:
| Q |
20 |
ggatgtcctaggtttaaaccaggaccgaccaatgagaaaaaactaatataacaactaaccactaacatttttcattnnnnnnnnnnnncacttcattgga |
119 |
Q |
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| T |
251133 |
ggatgtcctaggtttaaaccaggacctaccaatgagagaaaactaatataacaactaaccactaacatttttcattaaaaaaaaa----acttcattgga |
251228 |
T |
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| Q |
120 |
tatgttcaacaatgtctgcatgtttctgcaactttataacacaaaaccaagagaattaatagttaccccaatggtgggaatgaggaaacaaaatgtgttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
251229 |
tatgttcaacaatgtctgcatgtttctgcaactttataacacaaaaccaagagaattaatagttaccccaatggtgggaatgaggaaacaaaatgtgttg |
251328 |
T |
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| Q |
220 |
agttttactccaataattacaaataacaa |
248 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
251329 |
agttttactcgaataattacaaataacaa |
251357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 17608156 - 17608201
Alignment:
| Q |
50 |
aatgagaaaaaactaatataacaactaaccactaacatttttcatt |
95 |
Q |
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| T |
17608156 |
aatgagaaaaaactaagatgacaattaactactaacatttttcatt |
17608201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 26281990 - 26282026
Alignment:
| Q |
53 |
gagaaaaaactaatataacaactaaccactaacattt |
89 |
Q |
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||||||||| |||| |||||||||||||||||||||| |
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| T |
26281990 |
gagaaaaaattaatctaacaactaaccactaacattt |
26282026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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