View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9489_low_1 (Length: 860)
Name: NF9489_low_1
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9489_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 557; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 84 - 845
Target Start/End: Original strand, 36398012 - 36398743
Alignment:
| Q |
84 |
ttgaatatataggcatcattgcatcaagtaaacaagctacctgaactgagcatgaaggtcttaattctccaggtgaagtggaacattaacgtattaatca |
183 |
Q |
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| T |
36398012 |
ttgaatatataggcatcattgcatcaagtaaacaagctacctgaactgagcatgaaggtcttaattctccaggtgaagtggaacattaacgtattaatca |
36398111 |
T |
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| Q |
184 |
gctagctgcttaaagaagcaaataacataaaacaaaccaaagctgcttttaaattctatgtgacaattttgttaggcttttgattttgttcattaactag |
283 |
Q |
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| T |
36398112 |
gctagctgcttaaagaagcaaataacataaaacaaaccaaagctgcttttacattctatgtgacaattttgttaggcttttgattttgttcattaactag |
36398211 |
T |
|
| Q |
284 |
atttcatgttcttaattatgcagtatttctgcaagtggattgcttttccctaacagttttgctttcaaggatttggagtttctgtctatcaagatattct |
383 |
Q |
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| T |
36398212 |
atttcatgttcttaattatgcagtatatctgcaagtggattgcttttccctaacagttttgctttcaaggatttggagtttctgtctatcaagat----- |
36398306 |
T |
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| Q |
384 |
aagtactaattctaagttctaacaaaagagtagaatgtgaaaatttcaaaccggaagctaccccatttaacacccaggagcgtcaattctatgaagcgct |
483 |
Q |
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| T |
36398307 |
--------attctaagttctaac-aaagagtagaatgtgaaaatttcgaaccggaagctaccccatttaacacccaggagcgtcaattcaatgaagcgct |
36398397 |
T |
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| Q |
484 |
cgggtatattcattttacatgatacactcacgtctagaccgataataaatttagaaaatgacaaatcattctaattacttgtgtcgctatgttgacggta |
583 |
Q |
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| T |
36398398 |
cgggtatattcattgtacatgatacactcacgtctagaccgataataaatttagaaaatgataaatcattctaattacttgtgtcgctacgt-------- |
36398489 |
T |
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| Q |
584 |
tcgctatgatgacggtgtctgaatctgacacatatcagatatctgacacatcttcaatcagaagtgtcggtgctacaaacaacgtcattataacttctta |
683 |
Q |
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| T |
36398490 |
---------taacggtgtctgaatctgacacatatcaaatatctgacacatcttcaatcagaagtgtcggtgctacaaacaacgtcattataacttctta |
36398580 |
T |
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| Q |
684 |
tttagaacctgctttttaattatttttatacattcaacacacacatatacatatata--taatgacaccatctcatctcatacatttagagactataaag |
781 |
Q |
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| T |
36398581 |
tttagaacctactttttaattattttaataatttttatacattca-acacatatatatgtaatgacaccatctcatctcatacatttagagactataaag |
36398679 |
T |
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| Q |
782 |
taactgtttactctcaaaagttaaatgcggcccctgagagtgatgagttaaacaagaatattat |
845 |
Q |
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| T |
36398680 |
taactgtttactctcaaaagttaaatgcggctcctgagagtgatgagttaaacaagaatattat |
36398743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 36397897 - 36397969
Alignment:
| Q |
15 |
atactgatccaaaacttgagattaattgaataaaaaagaagaatagcaatatgcttaatttgcaattcattga |
87 |
Q |
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| T |
36397897 |
atactgatccaaaacttgagattaattgactaaaaaagaagaatagcaatatgcttaatttgcaattcattga |
36397969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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