View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9489_low_11 (Length: 345)
Name: NF9489_low_11
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9489_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 39234340 - 39234650
Alignment:
| Q |
18 |
gtctcaagttgattcagtaatttaattacaaaactttaatggaaatcagtcactgaatgatatttaatattttaatctctatagcatagtagttgaataa |
117 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39234340 |
gtctcacgttgattcagtaattta----caaaattttaatggaaatcagtcactgaatgatatttaatattttaatctctatagcatagtagttgaataa |
39234435 |
T |
|
| Q |
118 |
aaaactttgttttgcaccatgtcacactggctattggttgacaacaacacaagcttacaaaagtaacgtcaaacaatgcccttgaccaaaaaaggttcca |
217 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39234436 |
aaaactttgttttgcaccatgccacactggctattggttgacaacaacacaagcttacaaaagtaacgtcaaacaatgcccttgaccaaaaaaggttcca |
39234535 |
T |
|
| Q |
218 |
agggctataataatattggtgagtttcatggaaaataatctatttctagctaattcttacagaaccttcctagctgtaagaatatttttaaatagtagaa |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || |
|
|
| T |
39234536 |
agggctataataatatcggtgagtttcatggcaaataatctatttctagctaattcttacagaaccttcctagctgtaagaacatttttcaatagtaaaa |
39234635 |
T |
|
| Q |
318 |
tgaaaggatttgtct |
332 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39234636 |
tgaaaggatttgtct |
39234650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University