View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9489_low_15 (Length: 293)
Name: NF9489_low_15
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9489_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 32832646 - 32832369
Alignment:
| Q |
1 |
tcaaatggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtacctttagaatgggaagtgcagcaattcttctctcaaacaaaaaagaag |
100 |
Q |
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| T |
32832646 |
tcaaatggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtacctttagaatgggaagtgcagcaattcttctctcaaacaaaaaagaag |
32832547 |
T |
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| Q |
101 |
caaggaaaactgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttatttttcttgtagaagggaagaagattcaga |
200 |
Q |
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| T |
32832546 |
caagtaaaaccgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttatttttcttgtagaagggaagaagattcaga |
32832447 |
T |
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| Q |
201 |
tggaaaacttggggtgacactcaataaagacgtagctcaggcagctggtgaaacacttctttcaaatatttccacttt |
278 |
Q |
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| T |
32832446 |
tggaaaacttggggtgacactcaataaagacgtagctcaggcagctggtgaaacactcctttcaaatatttccacttt |
32832369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 32845927 - 32845650
Alignment:
| Q |
1 |
tcaaatggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtacctttagaatgggaagtgcagcaattcttctctcaaacaaaaaagaag |
100 |
Q |
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| T |
32845927 |
tcaaatggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtacctttagaatgggaagtgcagcaattcttctctcaaacaaaaaagaag |
32845828 |
T |
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| Q |
101 |
caaggaaaactgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttatttttcttgtagaagggaagaagattcaga |
200 |
Q |
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| T |
32845827 |
caagtaaaaccgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttatttttcttgtagaagggaagaagattcaga |
32845728 |
T |
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| Q |
201 |
tggaaaacttggggtgacactcaataaagacgtagctcaggcagctggtgaaacacttctttcaaatatttccacttt |
278 |
Q |
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| T |
32845727 |
tggaaaacttggggtgacactcaataaagacgtagctcaggcagctggtgaaacactcctttcaaatatttccacttt |
32845650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 17931997 - 17932274
Alignment:
| Q |
1 |
tcaaatggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtacctttagaatgggaagtgcagcaattcttctctcaaacaaaaaagaag |
100 |
Q |
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| T |
17931997 |
tcaaatggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtagctttagaatgggtagtgcagcaattcttctctcaaacaaaaaagaag |
17932096 |
T |
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| Q |
101 |
caaggaaaactgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttatttttcttgtagaagggaagaagattcaga |
200 |
Q |
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| T |
17932097 |
caagtaaaaccgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttattttgcttgtagaagggaagaagattcaga |
17932196 |
T |
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| Q |
201 |
tggaaaacttggggtgacactcaataaagacgtagctcaggcagctggtgaaacacttctttcaaatatttccacttt |
278 |
Q |
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| T |
17932197 |
tggaatacttggggtgacactcaataaagacgtagttcaggcagctggtgaaatactcctttcaaatatttccacttt |
17932274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 46188525 - 46188790
Alignment:
| Q |
7 |
ggttggtatcccggtaaagaaagatcaaagttgcatcttaactgtacctttagaatgggaagtgcagcaattcttctctcaaacaaaaaagaagcaagga |
106 |
Q |
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||||||||||| ||||| |||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
46188525 |
ggttggtatccaggtaaggaaaaatcaaagttgcttattaactgtctctttagaatgggaagtgcagcaattcttctttcaaacaaaaaagaagcaagta |
46188624 |
T |
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| Q |
107 |
aaactgcaaaatacaagttagttaggtcgcttagaacacaaagagcctttgatgacaaggcttatttttcttgtagaagggaagaagattcagatggaaa |
206 |
Q |
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| T |
46188625 |
aaaatgcaaaatatttgttacttaggacacttagaacacaaagagcttttgatgataaagcttatttatcctgtataagggaagaagattcagatggaaa |
46188724 |
T |
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| Q |
207 |
acttggggtgacactcaataaagacgtagctcaggcagctggtgaaacacttctttcaaatatttc |
272 |
Q |
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|||||||||||||||||| | || || ||| | ||||||||||||||||| |||||||||||| |
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| T |
46188725 |
acttggggtgacactcaagagggatgtgcttcatgtagctggtgaaacacttcgttcaaatatttc |
46188790 |
T |
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