View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9489_low_20 (Length: 280)
Name: NF9489_low_20
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9489_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 3746505 - 3746757
Alignment:
| Q |
18 |
atttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatcacattaagtata----catcatttaactgtccaag------cat |
107 |
Q |
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| T |
3746505 |
atttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatcacattaagtatatagacatcatttaactgtccaagtcgaagcat |
3746604 |
T |
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| Q |
108 |
ttcaggtattaatccatctactatcttgcatccaaatcatttagctgtccaacactattcattgatattttattgtgaatttcacactctcttgatacta |
207 |
Q |
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| T |
3746605 |
ttcaggtattaatccatctactatcttgcatccaaatcatttagctgtccaacactattcattgatattttattgtgaatttcacactctcttgatacta |
3746704 |
T |
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| Q |
208 |
ccatcattttcattactaatgacagttattacgaatgacatagtaatcctacc |
260 |
Q |
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| T |
3746705 |
ccatcattttcattactaatgacagttattacgaatgacatagtaatactacc |
3746757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 4123158 - 4123214
Alignment:
| Q |
16 |
tcatttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatca |
74 |
Q |
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| T |
4123158 |
tcatttaacacttcattttctctttatctc--tcttcctatcacatcaccaacatatca |
4123214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 7566437 - 7566381
Alignment:
| Q |
18 |
atttaacacttcattttctctctatctctatcttcttatcatatcaccaacctatca |
74 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |
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| T |
7566437 |
atttaacacttcattttctctctatctctctcttcctatcatatcatcaacctatca |
7566381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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