View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9489_low_23 (Length: 245)
Name: NF9489_low_23
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9489_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 7018931 - 7018832
Alignment:
| Q |
2 |
gttggcacaaggatgtacgtcggatgaaggagagcatgagtcctaatcgctcatcaccacgttggtcgttcatcaccatgttggaacaaggacgacagaa |
101 |
Q |
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| T |
7018931 |
gttggcacaaggatgtacgtcggatgaaggagagcatgagtcttagtcgctcatcaccacgttggtcgttcatcaccacgttggaacaaggacgtcagaa |
7018832 |
T |
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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 7018807 - 7018740
Alignment:
| Q |
161 |
cgttagatgaaggagatcatgagcttagtcactcatcaccatgtcacacaaggacgttgtgcgaagga |
228 |
Q |
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| T |
7018807 |
cgttagatgaaggagatcatgagcttagtcactcatcaccatgtcacacaaggacgttgtgcgaagga |
7018740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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