View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9489_low_27 (Length: 206)
Name: NF9489_low_27
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9489_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 50361649 - 50361476
Alignment:
| Q |
20 |
tttaggagcagaacatctaaataatttacttacctcaaattgaatcactctctgtgactcagccggatcacctacccatatgacaatcctccttatgact |
119 |
Q |
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| T |
50361649 |
tttaggagcagaacatctgtgtaatttacttacctcaaattgaatcactctctgtgactcagccgaatcacctacccatacgacaatcctccttatgact |
50361550 |
T |
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| Q |
120 |
cggctaaattgtcagcaccatacatcagctcttttggtagctttgctaaatgtactgaacaatattcaacacca |
193 |
Q |
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| T |
50361549 |
cggctaaattgtcagcaccgtacatcagctcttttggtagctttgctaaatgtactgaacaatattcaacacca |
50361476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 12604955 - 12605092
Alignment:
| Q |
20 |
tttaggagcagaacatctaaataatttacttacctcaaattgaatcactctctgtgactcagccggatcacctacccatatgacaatcctccttatgact |
119 |
Q |
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||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |||||||| | |||||||||| ||||||||||| |
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| T |
12604955 |
tttaggagcagaacatctacgtaatttacatacctcaaatataatcactctctgtgactcagccgaatcacctatctatatgacaattctccttatgacg |
12605054 |
T |
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| Q |
120 |
cggctaaattgtcagcaccatacatcagctcttttggt |
157 |
Q |
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| T |
12605055 |
caactaaattgtcgacacgatacatcagctcttttggt |
12605092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 30997831 - 30997968
Alignment:
| Q |
20 |
tttaggagcagaacatctaaataatttacttacctcaaattgaatcactctctgtgactcagccggatcacctacccatatgacaatcctccttatgact |
119 |
Q |
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|||| |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||| |
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| T |
30997831 |
tttaagagcagaacatctacgtaatttacatacctcaaatataatcactctctgtgactcagccgaatcacctatccatatgacaattctccttatgacg |
30997930 |
T |
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| Q |
120 |
cggctaaattgtcagcaccatacatcagctcttttggt |
157 |
Q |
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| | |||||||||| |||||||||||||||| |||||| |
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| T |
30997931 |
cagttaaattgtcaacaccatacatcagctcatttggt |
30997968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 6e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 10451954 - 10451817
Alignment:
| Q |
20 |
tttaggagcagaacatctaaataatttacttacctcaaattgaatcactctctgtgactcagccggatcacctacccatatgacaatcctccttatgact |
119 |
Q |
| |
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||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| |
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| T |
10451954 |
tttaggagcagaacatctacgtaatttacatacctcaaatataatcactctctgtgactcagtcgaatcacctatccatatgacaagtctccttatgacg |
10451855 |
T |
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| Q |
120 |
cggctaaattgtcagcaccatacatcagctcttttggt |
157 |
Q |
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|| |||||||||| ||||||||||||||||||||||| |
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| T |
10451854 |
cgactaaattgtcgacaccatacatcagctcttttggt |
10451817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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