View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9489_low_28 (Length: 206)
Name: NF9489_low_28
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9489_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 38461654 - 38461843
Alignment:
| Q |
13 |
cagagaatgcagaactttgcagatatactctattcgttatgatagaagtctctgcaaaagatcagcttaaaatttgatttctaagtgcggatttccatta |
112 |
Q |
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| T |
38461654 |
cagagaatgcagaactttgcagatatactctattcgttatgatagaagtctctgcaaaagatcagcttaaaatttgatttctaagtacggatttccatta |
38461753 |
T |
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| Q |
113 |
tttttcaaagttaattcatcataaggacagaaacttatttggnnnnnnngagagctttctgctgcatttctcttacctgatgtccatctcat |
204 |
Q |
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| T |
38461754 |
tttttcaaagttaattcatcataaggacagaaacttatttggaaaaaa--agagctttctgctgcatttctcttacctgcagtgcatctcat |
38461843 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 45834524 - 45834457
Alignment:
| Q |
25 |
aactttgcagatatactctattcgttatgatagaagtctctgcaaaagatcagcttaaaatttgattt |
92 |
Q |
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| T |
45834524 |
aactttgcagatacactccatgtgctatgatagaagtctctgcaataaatgagctcaaaatttgattt |
45834457 |
T |
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