View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9489_low_9 (Length: 365)
Name: NF9489_low_9
Description: NF9489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9489_low_9 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 31027097 - 31026763
Alignment:
| Q |
17 |
taaatccaattcatgtaatcaaaagtaaagaaatccgttataaagttagatggaaccaaacatagccatacctgagtaacgtagacatagtcatgaagca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
31027097 |
taaatccaattcatgtaatcaaaagtaaagaaatccgttataaagttagatggaaccaaacagagccatacctgagtagcgtagacatagtcatgaagca |
31026998 |
T |
|
| Q |
117 |
catgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31026997 |
catgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttctccgaaagttggtaaggatgtgttcctg |
31026898 |
T |
|
| Q |
217 |
agctgccaactagataaaagtttgtatacagtgtggtcctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaac |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31026897 |
agctgccaaccagataaaagtttgtatacagtgtggtcctttccagtcccacaaagatttcccatctccctctagagcatggatatccccatgttgcaac |
31026798 |
T |
|
| Q |
317 |
caatatgcactttgaatagtaaatttgtgagtatt |
351 |
Q |
| |
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||||| |||||||||||||||||| ||||||||| |
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| T |
31026797 |
caataaacactttgaatagtaaattggtgagtatt |
31026763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 34104077 - 34104411
Alignment:
| Q |
18 |
aaatccaattcatgtaatcaaaagtaaagaaatccgttataaagttagatggaaccaaacatagccatacctgagtaacgtagacatagtcatgaagcac |
117 |
Q |
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||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||||| |
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| T |
34104077 |
aaatccaattcttgcaatcaaaagtaaaaaaatcagttataaagttagatggaaccaaacggagccatacctgagtagcgtagacacagtcacgaagcac |
34104176 |
T |
|
| Q |
118 |
atgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctga |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||| ||||||||| || |||||||||||| |||| | |||| | |
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| T |
34104177 |
atgaatggtagtctcatcatctctcccacatctagtacaaagtggagatatactcactccccacttgcttctctgaaagttggtaacgatgcgctcctaa |
34104276 |
T |
|
| Q |
218 |
gctgccaactagataaaagtttgtatacagtgtggtcctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaacc |
317 |
Q |
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||||||||| |||| ||||||||||||||||||| || |||||||||| |||||||||||| ||| |||||| || ||||||||||| ||||||||||| |
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| T |
34104277 |
gctgccaacaagatgaaagtttgtatacagtgtgatcatttccagtcctacaaagatttccaatcatcctctagagtatggatatccctatgttgcaacc |
34104376 |
T |
|
| Q |
318 |
aatatgcactttgaatagtaaatttgtgagtatta |
352 |
Q |
| |
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||| ||||||||||||||||| |||||||||||| |
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| T |
34104377 |
tataagcactttgaatagtaaacttgtgagtatta |
34104411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 69 - 352
Target Start/End: Complemental strand, 27365372 - 27365091
Alignment:
| Q |
69 |
gaaccaaacatagccatacctgagtaacgtagacatagtcatgaagcacatgaatggtagtctcatcatctatcccacatctagtacaaagtggagatat |
168 |
Q |
| |
|
||||||||||||||||||| |||||| ||| |||||||| ||||||| ||||| ||| |||||||| ||| | ||||||||||||||||| ||||||| |
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| T |
27365372 |
gaaccaaacatagccatacttgagtagtgtaaacatagtcttgaagcatatgaacggttgtctcatcctctct-ccacatctagtacaaagcagagatat |
27365274 |
T |
|
| Q |
169 |
acccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctgagctgccaactagataaaagtttgtatacagtgtggtcctttccagtcccac |
268 |
Q |
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||| ||| ||||||||| ||| || ||||| |||||||| | |||| |||| | || |||||||| ||||| || ||||| | || ||| | |
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| T |
27365273 |
gaccactccccacttgcttctccagaaattggtgaggatgtgctatggagccaccaa-ttgacgaaagtttggatacaatgaagtcctcttcaatcctat |
27365175 |
T |
|
| Q |
269 |
aaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcactttgaatagtaaatttgtgagtatta |
352 |
Q |
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||||| |||| |||| |||| | || ||||||||||||||||| ||| ||| |||| ||| ||||||||| |||||||||| |
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| T |
27365174 |
aaagacttccaatcttcctccagggcgtggatatccccatgttgtaacgtataatcactctgactagtaaattggtgagtatta |
27365091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 113 - 204
Target Start/End: Original strand, 6323565 - 6323656
Alignment:
| Q |
113 |
agcacatgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaag |
204 |
Q |
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||||||||||||||||| ||||| ||| |||||||||||| ||||||||||||||| |||| ||| ||||||||| | ||||| |||||||| |
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| T |
6323565 |
agcacatgaatggtagtttcatcttctctcccacatctagaacaaagtggagatatgcccactccccacttgcttctacgaaaattggtaag |
6323656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 154 - 352
Target Start/End: Complemental strand, 3060440 - 3060242
Alignment:
| Q |
154 |
acaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctgagctgccaactagataaaagtttgtatacagtgtggt |
253 |
Q |
| |
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|||||||| |||||| |||| ||| || |||||| | | ||||||||||||||||||||| || || | | | | ||||||||||| ||| || ||| |
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| T |
3060440 |
acaaagtgcagatatgcccactccccatttgcttctacaaaagttggtaaggatgtgttcttgggccacaagccaaataaaagtttgaatatgatgaggt |
3060341 |
T |
|
| Q |
254 |
cctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcactttgaatagtaaatttgtgagtatta |
352 |
Q |
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| |||||||||| ||||||| ||| |||||| || | ||||| ||||| ||||||||||||| ||| |||||| |||| ||||||| ||||||||| |
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| T |
3060340 |
catttccagtccaacaaagaattctaatctccttcaaaggcatgaatatctccatgttgcaacctataagcacttcgaatggtaaattgatgagtatta |
3060242 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 6323681 - 6323769
Alignment:
| Q |
251 |
ggtcctttccagtcccacaaagatttcccatctccctctatagcatggatatccccatgttgcaaccaatatgcactttgaatagtaaa |
339 |
Q |
| |
|
||||||||| |||||||||| || |||| |||||| || | ||||| ||||| ||||||||||||| ||| ||||||||||| ||||| |
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| T |
6323681 |
ggtcctttctagtcccacaatgaattccaatctccttccaaggcatgaatatctccatgttgcaacctataagcactttgaatggtaaa |
6323769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 44812688 - 44812927
Alignment:
| Q |
18 |
aaatccaattcatgtaatcaaaagtaaagaaatccgttataaagttagatggaaccaaacatagccatacctgagtaacgtagacatagtcatgaagcac |
117 |
Q |
| |
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||||||||| |||| ||||||||||||||||||| ||||| || | |||||||| | | |||||||| ||||| | || ||| | || || || |
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| T |
44812688 |
aaatccaatccatgcaatcaaaagtaaagaaatcagttatgaaatgagatggaattaggcggagccatacttgagtttcataaacacaatcccagagtac |
44812787 |
T |
|
| Q |
118 |
atgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatgtgttcctga |
217 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||| ||||| ||||||||| |||| | | ||||||||| | |||||||||||||||||| | || || |
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| T |
44812788 |
atgaatggtagtttcatcttctctcccacatctaaaacaaa-tggagatatgcccacttcccacttgcttctacgaaagttggtaaggatgcgctcttgg |
44812886 |
T |
|
| Q |
218 |
gctgccaactagataaaagtttgtatacagtgtggtccttt |
258 |
Q |
| |
|
|||| | | ||||||||||||| ||||| || |||||||| |
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| T |
44812887 |
gctgtaagcaagataaaagtttgaatacaatgaggtccttt |
44812927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 34633909 - 34633983
Alignment:
| Q |
114 |
gcacatgaatggtagtctcatcatc-tatcccacatctagtacaaagtggagatatacccaatcctcacttgctt |
187 |
Q |
| |
|
||||||||||| |||| ||||| || | | |||||||||||||||||||||||||| |||| || ||||||||| |
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|
| T |
34633909 |
gcacatgaatgttagtttcatcttcctcttccacatctagtacaaagtggagatatgcccatcccccacttgctt |
34633983 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 46011876 - 46012052
Alignment:
| Q |
33 |
aatcaaaagtaaagaaatccgtt-ataaagttagatggaaccaaacatagccatacctgagtaacgtagacatagtcatgaagcacatgaatggtagtct |
131 |
Q |
| |
|
||||||||||||||||||| ||| || || | ||||||||| | | |||||||||| ||| || |||||| | ||| ||||||||||||||||| | |
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| T |
46011876 |
aatcaaaagtaaagaaatcagtttatgaaataagatggaactaggcggagccatacctaagttacatagacacaatcacagagcacatgaatggtagttt |
46011975 |
T |
|
| Q |
132 |
catcatctatcccacatctagtacaaagtggagatatacccaatcctcacttgcttatccgaaagttggtaaggatg |
208 |
Q |
| |
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|||| || | |||||||||| ||||||||||||||| |||| ||| ||||||||| | ||||| ||| |||||||| |
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| T |
46011976 |
catcttcgctgccacatctaggacaaagtggagatatgcccactccccacttgcttctacgaaaattgttaaggatg |
46012052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 51320 - 51419
Alignment:
| Q |
83 |
catacctgagtaacgtagacatagtcatgaagcacatgaatggtagtctcatcatctatcccacatctagtacaaagtggagatatacccaatcctcact |
182 |
Q |
| |
|
||||||||| || | |||||| |||| |||||||||| ||||||||| |||| ||| | || ||||||||| ||||||||||| |||| |||||||| |
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| T |
51320 |
catacctgattagcatagacacagtcttgaagcacattaatggtagtttcattttctcttccgcatctagtatgtagtggagatatgcccactcctcact |
51419 |
T |
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