View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9490_low_1 (Length: 413)

Name: NF9490_low_1
Description: NF9490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9490_low_1
NF9490_low_1
[»] chr2 (8 HSPs)
chr2 (96-184)||(24863412-24863500)
chr2 (55-92)||(15141599-15141636)
chr2 (56-88)||(14714136-14714168)
chr2 (55-90)||(2013172-2013207)
chr2 (55-89)||(22390301-22390335)
chr2 (55-89)||(44189974-44190008)
chr2 (55-88)||(23344878-23344911)
chr2 (56-85)||(25270691-25270720)
[»] chr8 (3 HSPs)
chr8 (56-93)||(1370179-1370216)
chr8 (55-89)||(41344557-41344591)
chr8 (55-91)||(40842073-40842109)
[»] chr3 (11 HSPs)
chr3 (111-167)||(21974489-21974545)
chr3 (111-167)||(21996920-21996976)
chr3 (111-167)||(22157598-22157654)
chr3 (55-90)||(41111959-41111994)
chr3 (111-193)||(6078066-6078148)
chr3 (55-88)||(20162584-20162617)
chr3 (55-89)||(31997952-31997986)
chr3 (56-90)||(49131004-49131038)
chr3 (55-88)||(19418049-19418082)
chr3 (56-85)||(23592387-23592416)
chr3 (55-91)||(51673012-51673048)
[»] chr5 (5 HSPs)
chr5 (55-90)||(40566103-40566138)
chr5 (55-89)||(20719903-20719937)
chr5 (56-85)||(17625916-17625945)
chr5 (55-88)||(24431507-24431540)
chr5 (55-99)||(30334642-30334686)
[»] chr1 (7 HSPs)
chr1 (55-90)||(46948128-46948163)
chr1 (55-88)||(40610378-40610411)
chr1 (56-88)||(7645443-7645475)
chr1 (55-89)||(28716292-28716326)
chr1 (55-89)||(43755574-43755608)
chr1 (56-85)||(24981678-24981707)
chr1 (56-85)||(46907126-46907155)
[»] chr6 (5 HSPs)
chr6 (55-89)||(34021060-34021094)
chr6 (89-193)||(19380996-19381101)
chr6 (55-89)||(16336958-16336992)
chr6 (55-89)||(30906551-30906585)
chr6 (55-92)||(26378270-26378307)
[»] scaffold0039 (1 HSPs)
scaffold0039 (89-193)||(81705-81810)
[»] chr4 (7 HSPs)
chr4 (55-88)||(16004216-16004249)
chr4 (56-89)||(55927134-55927167)
chr4 (111-167)||(39482202-39482258)
chr4 (55-89)||(24772820-24772854)
chr4 (55-89)||(25476770-25476804)
chr4 (56-85)||(34616491-34616520)
chr4 (56-85)||(56364158-56364187)
[»] chr7 (9 HSPs)
chr7 (55-103)||(10591301-10591348)
chr7 (55-88)||(5378776-5378809)
chr7 (56-85)||(7701464-7701493)
chr7 (59-88)||(44894363-44894392)
chr7 (56-85)||(46022376-46022405)
chr7 (55-87)||(7990222-7990254)
chr7 (111-167)||(9332661-9332717)
chr7 (56-92)||(30180657-30180693)
chr7 (56-88)||(32171024-32171056)


Alignment Details
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 24863412 - 24863500
Alignment:
Q  96 taatgtgaattgctggaaaactaaagaaaaacaaaagaatacaataaatcaatatgagggaaatttaaagaacaaatcaacgaatgata 184  Q
    ||||| |||||||  |||||||||||||||||||| |||||||||||||||||   |||||||||| ||||| || |||| ||| ||||    
T  24863412 taatgggaattgcgtgaaaactaaagaaaaacaaatgaatacaataaatcaatgcaagggaaatttgaagaaaaactcaatgaaggata 24863500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 15141599 - 15141636
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactctaaa 92  Q
    |||||||||||||||||||||||| |||||||||||||    
T  15141599 gttgtctcaaatggatgttcaaatgtcactactctaaa 15141636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 14714136 - 14714168
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcactactc 88  Q
    |||||||||||||||||||||||||||||||||    
T  14714136 ttgtctcaaatggatgttcaaatatcactactc 14714168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 2013207 - 2013172
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactcta 90  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2013207 gttgtctcaaatggatgttaaaatatcactactcta 2013172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 22390301 - 22390335
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    ||||||||||||||||||||||||||| |||||||    
T  22390301 gttgtctcaaatggatgttcaaatatctctactct 22390335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 44189974 - 44190008
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    |||||||| ||||||||||||||||||||||||||    
T  44189974 gttgtctcgaatggatgttcaaatatcactactct 44190008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 23344911 - 23344878
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactc 88  Q
    ||||||||||||| ||||||||||||||||||||    
T  23344911 gttgtctcaaatgaatgttcaaatatcactactc 23344878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 25270720 - 25270691
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcacta 85  Q
    ||||||||||||||||||||||||||||||    
T  25270720 ttgtctcaaatggatgttcaaatatcacta 25270691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 1370216 - 1370179
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcactactctaaaa 93  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1370216 ttgtctcaaatggatgttcaaatatcactactctaaaa 1370179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 41344591 - 41344557
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    |||||||||||||||||||||||||||||||||||    
T  41344591 gttgtctcaaatggatgttcaaatatcactactct 41344557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 40842073 - 40842109
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactctaa 91  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  40842073 gttgtatcaaatggttgttcaaatatcactactctaa 40842109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 21974489 - 21974545
Alignment:
Q  111 gaaaactaaagaaaaacaaaagaatacaataaatcaatatgagggaaatttaaagaa 167  Q
    ||||||||| |||||||||| ||||||||||||||||| | ||||||| ||||||||    
T  21974489 gaaaactaaggaaaaacaaatgaatacaataaatcaatgtaagggaaaattaaagaa 21974545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 21996920 - 21996976
Alignment:
Q  111 gaaaactaaagaaaaacaaaagaatacaataaatcaatatgagggaaatttaaagaa 167  Q
    ||||||||| |||||||||| ||||||||||||||||| | ||||||| ||||||||    
T  21996920 gaaaactaaggaaaaacaaatgaatacaataaatcaatgtaagggaaaattaaagaa 21996976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 22157598 - 22157654
Alignment:
Q  111 gaaaactaaagaaaaacaaaagaatacaataaatcaatatgagggaaatttaaagaa 167  Q
    ||||||||| |||||||||| ||||||||||||||||| | ||||||| ||||||||    
T  22157598 gaaaactaaggaaaaacaaatgaatacaataaatcaatgtaagggaaaattaaagaa 22157654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 41111994 - 41111959
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactcta 90  Q
    ||||||||||||||||||||||||||||||||||||    
T  41111994 gttgtctcaaatggatgttcaaatatcactactcta 41111959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 6078148 - 6078066
Alignment:
Q  111 gaaaactaaagaaaaacaaaagaatacaataaatcaatatgagggaaatttaaagaacaaatcaacgaatgatacaatagaaa 193  Q
    ||||||||||| |||||||| ||||||||||||||| | | |||||| ||| ||||| || |||| ||| |||| ||||||||    
T  6078148 gaaaactaaaggaaaacaaatgaatacaataaatcattgtaagggaagtttgaagaaaaagtcaatgaaggatataatagaaa 6078066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 20162617 - 20162584
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactc 88  Q
    ||||||||||||||||||||||||||||||||||    
T  20162617 gttgtctcaaatggatgttcaaatatcactactc 20162584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 31997952 - 31997986
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    |||||||||||||| ||||||||||||||||||||    
T  31997952 gttgtctcaaatggttgttcaaatatcactactct 31997986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 49131004 - 49131038
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcactactcta 90  Q
    |||||||||||||||||||||||||||||| ||||    
T  49131004 ttgtctcaaatggatgttcaaatatcactagtcta 49131038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 19418082 - 19418049
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactc 88  Q
    ||||||||||||||||||||||||||||| ||||    
T  19418082 gttgtctcaaatggatgttcaaatatcaccactc 19418049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 23592387 - 23592416
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcacta 85  Q
    ||||||||||||||||||||||||||||||    
T  23592387 ttgtctcaaatggatgttcaaatatcacta 23592416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 51673012 - 51673048
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactctaa 91  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  51673012 gttgtctaaaatggttgttcaaatatcactactctaa 51673048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 40566138 - 40566103
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactcta 90  Q
    ||||||||||||||||||||||||||||||||||||    
T  40566138 gttgtctcaaatggatgttcaaatatcactactcta 40566103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 20719937 - 20719903
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    |||||||||||||||||||||||||||||||||||    
T  20719937 gttgtctcaaatggatgttcaaatatcactactct 20719903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 17625916 - 17625945
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcacta 85  Q
    ||||||||||||||||||||||||||||||    
T  17625916 ttgtctcaaatggatgttcaaatatcacta 17625945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 24431540 - 24431507
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactc 88  Q
    |||||||||||||| |||||||||||||||||||    
T  24431540 gttgtctcaaatggttgttcaaatatcactactc 24431507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 30334686 - 30334642
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactctaaaatataat 99  Q
    |||||||||||||  ||||||||||| ||| ||||||||||||||    
T  30334686 gttgtctcaaatgagtgttcaaatattactcctctaaaatataat 30334642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 46948128 - 46948163
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactcta 90  Q
    ||||||||||||||||||||||||||||||||||||    
T  46948128 gttgtctcaaatggatgttcaaatatcactactcta 46948163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 40610378 - 40610411
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactc 88  Q
    ||||||||||||||||||||||||||||||||||    
T  40610378 gttgtctcaaatggatgttcaaatatcactactc 40610411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 7645475 - 7645443
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcactactc 88  Q
    |||||||||||||||||||||||||||||||||    
T  7645475 ttgtctcaaatggatgttcaaatatcactactc 7645443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 28716292 - 28716326
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    |||||||||||||| ||||||||||||||||||||    
T  28716292 gttgtctcaaatggttgttcaaatatcactactct 28716326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 43755608 - 43755574
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    |||||||||||||||||||||||||||| ||||||    
T  43755608 gttgtctcaaatggatgttcaaatatcattactct 43755574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 24981707 - 24981678
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcacta 85  Q
    ||||||||||||||||||||||||||||||    
T  24981707 ttgtctcaaatggatgttcaaatatcacta 24981678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 46907126 - 46907155
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcacta 85  Q
    ||||||||||||||||||||||||||||||    
T  46907126 ttgtctcaaatggatgttcaaatatcacta 46907155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 34021094 - 34021060
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    |||||||||||||||||||||||||||||||||||    
T  34021094 gttgtctcaaatggatgttcaaatatcactactct 34021060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 19381101 - 19380996
Alignment:
Q  89 taaaatataatgtgaattgctggaaaactaaagaaaaacaaaagaatacaa-taaatcaatatgagggaaatttaaagaacaaatcaacgaatgatacaa 187  Q
    |||||||||||   ||||||  ||| |||||||||||||||| |||||||| ||||||||  | | |||||||| ||||| || |||| |||||||| ||    
T  19381101 taaaatataattgtaattgcatgaatactaaagaaaaacaaatgaatacaattaaatcaaggtaaaggaaatttgaagaaaaattcaatgaatgatataa 19381002  T
Q  188 tagaaa 193  Q
    ||||||    
T  19381001 tagaaa 19380996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 16336992 - 16336958
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    |||||||||||||||||||||||||||| ||||||    
T  16336992 gttgtctcaaatggatgttcaaatatcattactct 16336958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 30906585 - 30906551
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    ||||| |||||||||||||||||||||||||||||    
T  30906585 gttgtttcaaatggatgttcaaatatcactactct 30906551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 26378307 - 26378270
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactctaaa 92  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  26378307 gttgtctaaaatggttgttcaaatatcactactctaaa 26378270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 81810 - 81705
Alignment:
Q  89 taaaatataatgtgaattgctggaaaactaaagaaaaacaaaagaatacaa-taaatcaatatgagggaaatttaaagaacaaatcaacgaatgatacaa 187  Q
    |||||||||||   ||||||  ||| |||||||||||||||| |||||||| ||||||||  | | |||||||| ||||| || |||| |||||||| ||    
T  81810 taaaatataattgtaattgcatgaatactaaagaaaaacaaatgaatacaattaaatcaaggtaaaggaaatttgaagaaaaattcaatgaatgatataa 81711  T
Q  188 tagaaa 193  Q
    ||||||    
T  81710 tagaaa 81705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 88
Target Start/End: Complemental strand, 16004249 - 16004216
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactc 88  Q
    ||||||||||||||||||||||||||||||||||    
T  16004249 gttgtctcaaatggatgttcaaatatcactactc 16004216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 55927134 - 55927167
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcactactct 89  Q
    ||||||||||||||||||||||||||||||||||    
T  55927134 ttgtctcaaatggatgttcaaatatcactactct 55927167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 39482202 - 39482258
Alignment:
Q  111 gaaaactaaagaaaaacaaaagaatacaataaatcaatatgagggaaatttaaagaa 167  Q
    ||||||||| |||||||||| ||||||||||||||||| | ||||||| || |||||    
T  39482202 gaaaactaaggaaaaacaaatgaatacaataaatcaatgtaagggaaaattgaagaa 39482258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 24772820 - 24772854
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    ||||||||||||||||||||||||||||| |||||    
T  24772820 gttgtctcaaatggatgttcaaatatcaccactct 24772854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 25476770 - 25476804
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactct 89  Q
    |||||||||||||||||||||||||||| ||||||    
T  25476770 gttgtctcaaatggatgttcaaatatcattactct 25476804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 34616491 - 34616520
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcacta 85  Q
    ||||||||||||||||||||||||||||||    
T  34616491 ttgtctcaaatggatgttcaaatatcacta 34616520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 56364187 - 56364158
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcacta 85  Q
    ||||||||||||||||||||||||||||||    
T  56364187 ttgtctcaaatggatgttcaaatatcacta 56364158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 10591301 - 10591348
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactctaaaatataatgtga 103  Q
    |||||||||||||| ||||||||||||||||||| |||| |||||||||    
T  10591301 gttgtctcaaatggttgttcaaatatcactactc-aaaacataatgtga 10591348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 5378776 - 5378809
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactactc 88  Q
    ||||||||||||||||||| ||||||||||||||    
T  5378776 gttgtctcaaatggatgtttaaatatcactactc 5378809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Original strand, 7701464 - 7701493
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcacta 85  Q
    ||||||||||||||||||||||||||||||    
T  7701464 ttgtctcaaatggatgttcaaatatcacta 7701493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 88
Target Start/End: Complemental strand, 44894392 - 44894363
Alignment:
Q  59 tctcaaatggatgttcaaatatcactactc 88  Q
    ||||||||||||||||||||||||||||||    
T  44894392 tctcaaatggatgttcaaatatcactactc 44894363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 85
Target Start/End: Complemental strand, 46022405 - 46022376
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcacta 85  Q
    ||||||||||||||||||||||||||||||    
T  46022405 ttgtctcaaatggatgttcaaatatcacta 46022376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 7990222 - 7990254
Alignment:
Q  55 gttgtctcaaatggatgttcaaatatcactact 87  Q
    ||||||||||||| |||||||||||||||||||    
T  7990222 gttgtctcaaatgaatgttcaaatatcactact 7990254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 9332661 - 9332717
Alignment:
Q  111 gaaaactaaagaaaaacaaaagaatacaataaatcaatatgagggaaatttaaagaa 167  Q
    ||||||||| ||||||||||  |||||||||||||||| | ||||||| || |||||    
T  9332661 gaaaactaaggaaaaacaaatcaatacaataaatcaatgtaagggaaaattgaagaa 9332717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 30180657 - 30180693
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcactactctaaa 92  Q
    |||| |||||| |||||||||||||||||||||||||    
T  30180657 ttgtttcaaatagatgttcaaatatcactactctaaa 30180693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 32171056 - 32171024
Alignment:
Q  56 ttgtctcaaatggatgttcaaatatcactactc 88  Q
    ||||||||||||| |||||||||||||||||||    
T  32171056 ttgtctcaaatggttgttcaaatatcactactc 32171024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University