View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9490_low_2 (Length: 343)
Name: NF9490_low_2
Description: NF9490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9490_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 30711678 - 30711364
Alignment:
| Q |
19 |
cattgtgaattatctctgtgaatgtatgctttgattgttcatgcttatttaaatctaagcacaattgcattcttttcggtttttccaaggagcaacttga |
118 |
Q |
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| T |
30711678 |
cattgtgaattatctctgtgaatgtatgctttgattgttcatgcttatttaaatctaagcacaattgcattcttttcagtttttccaaggagcaacttga |
30711579 |
T |
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| Q |
119 |
gttatatatctccataacatacacaatgttgtttcatgtttgctttgcaatatttcatgatcatttttcaccattgcttttgtcaaacaatggtaattca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30711578 |
gttatatatctccataacatacacaatgttgtttcatgtttgctttgcaatatttcatgatcatttttcactgttgcttttgtcaaacaatggtaattca |
30711479 |
T |
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| Q |
219 |
tacaatggccacccaccttttgttaagttaatttttgaaaacctccttataaacatgatactcttagatggagagatcatggcacatgttcatcactttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30711478 |
tacaatggccacccaccttttgttaagttaatttttgaaaacctccttataaacatgatactcttagatggagagatcatggcacatgttcatcactttt |
30711379 |
T |
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| Q |
319 |
cacaagacccctatg |
333 |
Q |
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||||||||||||||| |
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| T |
30711378 |
cacaagacccctatg |
30711364 |
T |
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