View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9490_low_3 (Length: 264)
Name: NF9490_low_3
Description: NF9490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9490_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 32347524 - 32347286
Alignment:
| Q |
11 |
cacagatattgcttgcatccgattaggtaacgttcatgtgattacaattagcgatcctgaaattgcacgtgaattgtgtataaaacaagatgcaattttt |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32347524 |
cacagatattgcttgcatccgtttaggtaacgttcatgtgattacaattagcgatcctgaaattgcacgtgaattgtgtataaaacaagatgcaattttt |
32347425 |
T |
|
| Q |
111 |
gcatcaagaccaagtagttggtcaaatgagtatgttactaatggttatctaaccacagcactcactccctttggtgaacaatggaagaaagtgaagaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32347424 |
gcatcaagaccaagtagttggtcaaatgagtatgttactaatggttatctaaccacagcactcactccctttggagaacaatggaagaaagtgaagaaag |
32347325 |
T |
|
| Q |
211 |
ttattagcaatgaactagtttcccctcttagacataaat |
249 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |
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| T |
32347324 |
ttattagcaatgagctagtttcccctcttagacataaat |
32347286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 31276204 - 31275966
Alignment:
| Q |
11 |
cacagatattgcttgcatccgattaggtaacgttcatgtgattacaattagcgatcctgaaattgcacgtgaattgtgtataaaacaagatgcaattttt |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31276204 |
cacagatattgcttgcatccgtttaggtaacgttcatgtgattacaattagcgatcctgaaattgcacgtgaattgtgtataaaacaagatgcaattttt |
31276105 |
T |
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| Q |
111 |
gcatcaagaccaagtagttggtcaaatgagtatgttactaatggttatctaaccacagcactcactccctttggtgaacaatggaagaaagtgaagaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31276104 |
gcatcaagaccaagtagttggtcaaatgagtatgttactaatggttatctaaccacagcactcactccctttggagaacaatggaagaaagtgaagaaag |
31276005 |
T |
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| Q |
211 |
ttattagcaatgaactagtttcccctcttagacataaat |
249 |
Q |
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| ||||||||||| ||||||||||||||||||||||||| |
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| T |
31276004 |
taattagcaatgagctagtttcccctcttagacataaat |
31275966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 32364186 - 32363948
Alignment:
| Q |
11 |
cacagatattgcttgcatccgattaggtaacgttcatgtgattacaattagcgatcctgaaattgcacgtgaattgtgtataaaacaagatgcaattttt |
110 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32364186 |
cacagatattgcttgcatccgtttaggtaacgttcacgtgattacaattagcgatcctgaaattgcacgtgaattgtgtataaaacaagatgcaattttt |
32364087 |
T |
|
| Q |
111 |
gcatcaagaccaagtagttggtcaaatgagtatgttactaatggttatctaaccacagcactcactccctttggtgaacaatggaagaaagtgaagaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32364086 |
gcatcaagaccaagtagttggtcaaatgagtatgttactaatggttatctaaccacagcactcactccctttggagaacaatggaagaaagtgaagaaag |
32363987 |
T |
|
| Q |
211 |
ttattagcaatgaactagtttcccctcttagacataaat |
249 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
32363986 |
ttattagcaatgagctagtttcccctcttagacataaat |
32363948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 31270432 - 31270194
Alignment:
| Q |
11 |
cacagatattgcttgcatccgattaggtaacgttcatgtgattacaattagcgatcctgaaattgcacgtgaattgtgtataaaacaagatgcaattttt |
110 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
31270432 |
cacagatattgcttgcatccgtttaggtaacgttcatgtgattacaattagtgatcctgaaattgcgcgtgaattatgtataaaacaagatgcaattttt |
31270333 |
T |
|
| Q |
111 |
gcatcaagaccaagtagttggtcaaatgagtatgttactaatggttatctaaccacagcactcactccctttggtgaacaatggaagaaagtgaagaaag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31270332 |
gcatcaagaccaagtagttggtcaaatgagtatgttactaatggttatctaaccacagcactcactccctttggagaacaatggaagaaagtgaagaaag |
31270233 |
T |
|
| Q |
211 |
ttattagcaatgaactagtttcccctcttagacataaat |
249 |
Q |
| |
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| ||||||||||| ||||||||||||||||||||||||| |
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| T |
31270232 |
taattagcaatgagctagtttcccctcttagacataaat |
31270194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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