View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9490_low_4 (Length: 228)
Name: NF9490_low_4
Description: NF9490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9490_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 50505649 - 50505512
Alignment:
| Q |
75 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
174 |
Q |
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| T |
50505649 |
tttaaaagtccgctgttatgcaatggtttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgt |
50505550 |
T |
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| Q |
175 |
atttttcttatcagataatgcctttgcttattcctatt |
212 |
Q |
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| T |
50505549 |
atttttcttatcagataatgcctttgcttattcctatt |
50505512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 50505746 - 50505682
Alignment:
| Q |
15 |
cacagatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
79 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505746 |
cacacatcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggttttaa |
50505682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 28733612 - 28733723
Alignment:
| Q |
101 |
tttcatcatgttttagataatgatttctatattccccatgaagccatgatatgttagtattttgtttagcttgtatttttcttatcagataatgcctttg |
200 |
Q |
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||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |
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| T |
28733612 |
tttcatcatattttagataatgatttatatattccccatgaggccatgatatgttagtattttgttttgcttatatttttcttatcagataatgtctttg |
28733711 |
T |
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| Q |
201 |
cttattcctatt |
212 |
Q |
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|||| |||||| |
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| T |
28733712 |
tttatgcctatt |
28733723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 28733499 - 28733556
Alignment:
| Q |
20 |
atcaatcactatcatacacgaacctaaaaatcaccgatatagtttatgcaatggtttt |
77 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28733499 |
atcaatcactatcatgcacgaacctaaaaatcaccaatatagtttatgcaatggtttt |
28733556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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