View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9491_high_2 (Length: 246)
Name: NF9491_high_2
Description: NF9491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9491_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 9439082 - 9438899
Alignment:
| Q |
14 |
acatgttatatttttcagctgtttaaatttaagttagttcgcatgcaaaaatattttacactcaaatcatttaagatgttaaatataaaatttaatcaat |
113 |
Q |
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| T |
9439082 |
acatgttatatttttcagctgtttaaatttaagttagttcgcttgcaaaaatattttacgctcaaatcatttaagatgttaaatataaaatttaatcaat |
9438983 |
T |
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| Q |
114 |
tattataatttctacttcatttttatgtattttgttacaatattcaaaataaaatatttagaagtgatttcaagaactacaaagt |
198 |
Q |
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| T |
9438982 |
tattataatttctacttcatttttatgtattttgttacaatattcaaaat-aaatatttagaagtgatttcaagaactacaaagt |
9438899 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 15602727 - 15602775
Alignment:
| Q |
198 |
tgtctgtttggataagcgtattagctctgtaaacgtcggttcaaacctc |
246 |
Q |
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| T |
15602727 |
tgtctgtttggataagcgttttagctctgcaagcgctggttcaaacctc |
15602775 |
T |
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